<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style="--code-editor-font: GitLab Mono, JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: "GitLab Sans", -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: "GitLab Sans", -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/15b23388240f34da4d57eaf22ffee3fb6f660b1d">15b23388</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-11-06T22:51:15+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.5.56+dfsg</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#4ed0809c2483f5150cdfd2c3bf07d212387406d0">
res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
</a>
</li>
<li class="file-stats">
<a href="#817efc81f1180519a6136b50a447433f20cf679d">
res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
</a>
</li>
<li class="file-stats">
<a href="#bc98d7300147ce39ef8ee0f9b35f3252bebd01d2">
res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
</a>
</li>
<li class="file-stats">
<a href="#43faaf1f56e02d91be5b281472029a32276f7b4c">
res/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
</a>
</li>
<li class="file-stats">
<a href="#48abec8e0d198814ad3898dd7c82ef8b52eef776">
res/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
</a>
</li>
<li class="file-stats">
<a href="#c259485f7f96dc2ad350d5448508de915c6a9885">
res/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
</a>
</li>
<li class="file-stats">
<a href="#47d95b5a10f6efb1b65d4dc70843f7c6b6c15139">
res/TemplateBatchFiles/YangNielsenBranchSite2005.bf
</a>
</li>
<li class="file-stats">
<a href="#5162429bd3f362a69890c6b040d4be37e11a6308">
res/TemplateBatchFiles/files.lst
</a>
</li>
<li class="file-stats">
<a href="#65ee9d47988109d0925fe3692b68b7b246e7fc1d">
res/TemplateBatchFiles/libv3/IOFunctions.bf
</a>
</li>
<li class="file-stats">
<a href="#c50a9ebb34fca832759d3d11698588f8851c99cb">
res/TemplateBatchFiles/libv3/UtilityFunctions.bf
</a>
</li>
<li class="file-stats">
<a href="#5dfec713e3892a936e8b5a63db56c03bee3ec252">
res/TemplateBatchFiles/libv3/all-terms.bf
</a>
</li>
<li class="file-stats">
<a href="#dfd756e8dd7809cfcca4783e8618cc0aa8430dd1">
res/TemplateBatchFiles/libv3/convenience/math.bf
</a>
</li>
<li class="file-stats">
<a href="#04266769a57e3da898ac30696629599a2dbf70a6">
res/TemplateBatchFiles/libv3/convenience/regexp.bf
</a>
</li>
<li class="file-stats">
<a href="#95a7c74b0e59bc9dc8d85b6ac4b02d308b4e09fb">
res/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
</a>
</li>
<li class="file-stats">
<a href="#d3ad56ea8debe5ec6fc29c1fb5a1bb44d800352b">
res/TemplateBatchFiles/libv3/models/frequencies.bf
</a>
</li>
<li class="file-stats">
<a href="#0ad5f4d1790906a0091532d9ca355a6162bf3c31">
res/TemplateBatchFiles/libv3/models/model_functions.bf
</a>
</li>
<li class="file-stats">
<a href="#801d4bca405dfccac3b1e451b211ca98bd00d599">
res/TemplateBatchFiles/libv3/models/parameters.bf
</a>
</li>
<li class="file-stats">
<a href="#c7933e171033f4eac9d83419583cca5474f9266c">
res/TemplateBatchFiles/libv3/tasks/estimators.bf
</a>
</li>
<li class="file-stats">
<a href="#3945e6db8feb0e4ed58719b69ff3d8485bc45e87">
res/TemplateBatchFiles/libv3/tasks/trees.bf
</a>
</li>
<li class="file-stats">
<a href="#8a69dee2f788bb0a322baeea6361ea2c1e8998be">
src/core/avllistxl.cpp
</a>
</li>
<li class="file-stats">
<a href="#02cbcb76e8ce1aa3e72d55e6696cda20813d57b6">
src/core/batchlan.cpp
</a>
</li>
<li class="file-stats">
<a href="#cbedcf5fec686e5f563504b995c5d7d07fd8c6b2">
src/core/batchlanruntime.cpp
</a>
</li>
<li class="file-stats">
<a href="#10496a7488dc0332386e6f734ef450e847cb8aac">
src/core/constant.cpp
</a>
</li>
<li class="file-stats">
<a href="#d09b45303442d6299978fa8d0c8f3338d6a17886">
src/core/formula.cpp
</a>
</li>
<li class="file-stats">
<a href="#59d202cc6599be3167fc3bd731039997dcaf9c72">
src/core/fstring.cpp
</a>
</li>
<li class="file-stats">
<a href="#07aceb8d215a75908cea626d9c80bc2a7c06639c">
src/core/global_things.cpp
</a>
</li>
<li class="file-stats">
<a href="#3630347a385a6cb8a925c3f50d10bb9d31e0e170">
src/core/include/avllistxl.h
</a>
</li>
<li class="file-stats">
<a href="#0d4affbfbdf5d403787e67adb184b6f8a7d859c2">
src/core/include/constant.h
</a>
</li>
<li class="file-stats">
<a href="#40fc4f1e42852e6f2302e213cd9b3646abe98291">
src/core/include/formula.h
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/hyphy/-/commit/15b23388240f34da4d57eaf22ffee3fb6f660b1d">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/hyphy/-/commit/15b23388240f34da4d57eaf22ffee3fb6f660b1d"}}</script>


</p>
</div>
</body>
</html>