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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/samtools">Debian Med / samtools</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/3e070ffd78c060fd5c0d83b60b41b4a8c9063b83">3e070ffd</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-11-08T07:21:23+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.18</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<ul>
<li class="file-stats">
<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
INSTALL
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</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
README
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</li>
<li class="file-stats">
<a href="#49977dcd2454890ef52ad55cab2161e1108da37c">
bam_ampliconclip.c
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</li>
<li class="file-stats">
<a href="#a570bc81d25a3e7cca80a8fb33741c4cd427a6e0">
bam_consensus.c
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<li class="file-stats">
<a href="#1b031362756348a3fc06a80a67e2440c22c1f4ad">
bam_fastq.c
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<li class="file-stats">
<a href="#7e7625df357c73e60fb5763cc5124783c1c76fc6">
bam_import.c
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<li class="file-stats">
<a href="#9c88dc776e2c0fafefd9efcafebfc5ff56b0e55c">
bam_index.c
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<li class="file-stats">
<a href="#89a03e702f4bc3e36cdfde2781a3be558535682e">
bam_markdup.c
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<li class="file-stats">
<a href="#4fc4365483305125a81f12902c48a4deca801439">
bam_md.c
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<li class="file-stats">
<a href="#ad908a7d8d476fe7525581606ebe74fee6c9ef3a">
bam_reheader.c
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<li class="file-stats">
<a href="#4554809383bbbc3e2470c76b4bfd91881ede7125">
bam_sort.c
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<li class="file-stats">
<a href="#b80f6d653474c3fd4413bdefffae9a6c73c046af">
bam_split.c
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<li class="file-stats">
<a href="#19ca6d42013c2103588ff1e42bee19d5df9de59e">
bam_tview_curses.c
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</li>
<li class="file-stats">
<a href="#626f775b286121e6af2d42eb75cd46e1cee23a5f">
bamshuf.c
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<li class="file-stats">
<a href="#9261b4fc9ce7141aa67c20746cad618b69bccc01">
consensus_pileup.c
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<li class="file-stats">
<a href="#5c3ddca202f54b02060faa81476f06dae0bea50d">
consensus_pileup.h
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<li class="file-stats">
<a href="#32eea6a920420c72388795ef9efabec4b924894b">
cram_size.c
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<li class="file-stats">
<a href="#131ea2eda9731473dd1cf610feea1c836c24ccb2">
doc/samtools-addreplacerg.1
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<li class="file-stats">
<a href="#890899d7ef7d59def631cb6b62d724f647d1ea35">
doc/samtools-ampliconclip.1
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<li class="file-stats">
<a href="#e841393fcf15d28d19530298ba64d7d1868506d2">
doc/samtools-ampliconstats.1
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<li class="file-stats">
<a href="#4b8c2f7ba6fa197665c9cf755ac0e7c47ef7db6b">
doc/samtools-bedcov.1
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</li>
<li class="file-stats">
<a href="#4c3d326fc8bbbf65887e3e6426ea12174df3531c">
doc/samtools-calmd.1
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</li>
<li class="file-stats">
<a href="#33e2c5090c4952098ad28f0641247e1e9769750d">
doc/samtools-cat.1
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</li>
<li class="file-stats">
<a href="#d9f205daf2940bd82b3b37a703ddf89bbb14dd51">
doc/samtools-collate.1
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</li>
<li class="file-stats">
<a href="#3ab3be1ab74b4148fadb62c3fd12d639ee398b07">
doc/samtools-consensus.1
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</li>
<li class="file-stats">
<a href="#264b9241d88d427e876a36aa185da92c181115c3">
doc/samtools-coverage.1
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</li>
<li class="file-stats">
<a href="#23d0ec5afec54990b27e54d05770d702a238ac9a">
doc/samtools-cram-size.1
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<li class="file-stats">
<a href="#31bffc3927893d7eac31c1fa42c32a311ecba796">
doc/samtools-depad.1
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The diff was not included because it is too large.
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