<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style="--code-editor-font: GitLab Mono, JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: "GitLab Sans", -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: "GitLab Sans", -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Noto Sans", Ubuntu, Cantarell, "Helvetica Neue", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/pbbam">Debian Med / pbbam</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/pbbam/-/commit/ac80c20d9a9c97af8d25dad206945bbdf5f92836">ac80c20d</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-11-08T16:45:34+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.4.0+dfsg</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#feedf4d0444f717d7227468a9529c2cf9740b6fd">
include/meson.build
</a>
</li>
<li class="file-stats">
<a href="#6f0af9cd5ecfc522cf50a17f98ffea7c95f16624">
include/pbbam/BamRecordImpl.h
</a>
</li>
<li class="file-stats">
<a href="#6e248c6cae663274b0f665f097ee18882b48f800">
include/pbbam/Config.h
</a>
</li>
<li class="file-stats">
<a href="#80a51748ac8ee7298b3eaa8881107a810b196c97">
include/pbbam/ReadGroupInfo.h
</a>
</li>
<li class="file-stats">
<a href="#bf0a52c946ddcf8a5679070f4f29368f00b8d600">
<span class="new-file">
+
include/pbbam/csv/CsvReader.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#636dc5ef235c83bc130bc85f1289b36146693eb8">
<span class="new-file">
+
include/pbbam/csv/CsvTypes.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#20c3a69bc9caa7a655899a4ac40bbf9b206aa21c">
<span class="new-file">
+
include/pbbam/csv/CsvWriter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#0cc1139e3347f573ae1feee5b73dbc8a8a21fcfa">
meson.build
</a>
</li>
<li class="file-stats">
<a href="#bbb35181438940bb32918443b903576239decf8d">
src/BamHeader.cpp
</a>
</li>
<li class="file-stats">
<a href="#e0820644d18c5c08f877e2fdd356cbae7bc79dfc">
src/BamRecordImpl.cpp
</a>
</li>
<li class="file-stats">
<a href="#43f3a2f0bebdb529ca05012057934ee5ec4985b0">
src/Config.cpp
</a>
</li>
<li class="file-stats">
<a href="#f460042100071ef4715130bfb7aece4359c98133">
src/IndexedBamWriter.cpp
</a>
</li>
<li class="file-stats">
<a href="#12b56eef14b24d26cc18199b5bcb51d2807d8f23">
src/ReadGroupInfo.cpp
</a>
</li>
<li class="file-stats">
<a href="#12e3baea36d13137b131f7a20974bc39c8c83177">
src/SamWriter.cpp
</a>
</li>
<li class="file-stats">
<a href="#ffb90c52bfb5934779e189dc030576ccc716ddbe">
<span class="new-file">
+
src/csv/CsvReader.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#038fd2d68446e183591039cd40032eeaa443685d">
<span class="new-file">
+
src/csv/CsvWriter.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#17867de5076d50e87826675d7ed81840420e4676">
src/meson.build
</a>
</li>
<li class="file-stats">
<a href="#f97a5829697f31871b9d6c99f4c4eaa2862d542d">
subprojects/gtest.wrap
</a>
</li>
<li class="file-stats">
<a href="#cc433c731b25b0dbbaccf402481864ffaf3bf16d">
subprojects/htslib.wrap
</a>
</li>
<li class="file-stats">
<a href="#7b1d2778171cb29c29533faddd0eaf0a22df0568">
subprojects/zlib.wrap
</a>
</li>
<li class="file-stats">
<a href="#41a05ae9a040592113c552f97c07d5107367f195">
<span class="new-file">
+
tests/data/csv/comma_separated.csv
</span>
</a>
</li>
<li class="file-stats">
<a href="#a1e54636f86bfc425364029f362166690283dfee">
<span class="new-file">
+
tests/data/csv/comma_separated.csv.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#a00e652b706b6a9a57fcb3aa6368c68c50edaba4">
<span class="new-file">
+
tests/data/csv/missing_fields.csv
</span>
</a>
</li>
<li class="file-stats">
<a href="#a51678e6e9a0d354ab97b44f491b8cde9eee4885">
<span class="new-file">
+
tests/data/csv/tab_separated.csv
</span>
</a>
</li>
<li class="file-stats">
<a href="#73c90aab2dd2a549744e5d31507f0c478067d54b">
<span class="new-file">
+
tests/data/csv/tab_separated.csv.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#29853b30bf2e261f3dd7fd99557900bf777daac8">
<span class="new-file">
+
tests/data/csv/too_many_fields.csv
</span>
</a>
</li>
<li class="file-stats">
<a href="#30d31f3c7bebba69a52a2cbbbac433fe1aaa2514">
tests/src/cram/pbbamify.t.in
</a>
</li>
<li class="file-stats">
<a href="#da6439ca1ce5f2a841511d60b57d99e80273937c">
tests/src/cram/pbmerge_fofn.t.in
</a>
</li>
<li class="file-stats">
<a href="#0f0a5ce8b19b2b4ed1a9c86743a85234a8897c8b">
tests/src/meson.build
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/pbbam/-/commit/ac80c20d9a9c97af8d25dad206945bbdf5f92836">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/pbbam/-/commit/ac80c20d9a9c97af8d25dad206945bbdf5f92836"}}</script>
</p>
</div>
</body>
</html>