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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/macs">Debian Med / macs</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/2fe67243a65a5c0838c870760cefd66663792263">2fe67243</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-11-15T20:44:36+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/9a7ca9d21714e5c2a4a4248f65997b20bd505b50">9a7ca9d2</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-11-15T20:44:40+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.0.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/583260799ee6d67435fbb8169f5f4a0206007ddb">58326079</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2023-11-15T20:52:04+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/3.0.0'
Update to upstream version '3.0.0'
with Debian dir dc4365cf685efa9c9bc5963948b76b45a2cd3b89</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/59b2e5a56835895491299ed4687c9bbf8a076b2a">59b2e5a5</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-11-16T11:22:27+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshed patches.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/2eead762999aa640c1ba34fff32b3dd6c2bf4316">2eead762</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-11-16T11:30:03+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/copyright: MACS2/khash.h→MACS3/fermi-lite/khash.h
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/d8b8487d96a4003888b60c364c1efe34e501ae86">d8b8487d</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2023-11-16T17:25:12+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/clean: remove temp/ directory leftover from test execution.
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
29 changed files:
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<a href="#a03585ab89eed5e0782a1875b2d8153b97865d30">
.github/ISSUE_TEMPLATE/bug_report.md
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.github/ISSUE_TEMPLATE/windows_issues.md
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<a href="#c3abc7b7fc93dc7d76eee7b78d9001deda58ff9f">
.github/workflows/build-and-test-MACS3-macos12.yml
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<a href="#5fca4a277c7fe3039bd98932d6f4047be18d5b4b">
.github/workflows/build-and-test-MACS3-non-x64.yml
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<a href="#117c01e3f0933c3b1e39f3ed43e4b2a5922e4e7c">
.github/workflows/build-and-test-MACS3-x64.yml
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<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<a href="#e68de698546fc7a1e1db62076e33c2aee34f9930">
MACS3/Commands/bdgpeakcall_cmd.py
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<a href="#e4c931cdc9cbef6af4b1a5d7c1cadcdf12143ede">
MACS3/Commands/hmmratac_cmd.py
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<a href="#4bf4dfd070c077844880d04d298677a396f28348">
MACS3/IO/Parser.pyx
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<a href="#ad4c146bdb4989a5cb4cd3704bd125acd1753141">
MACS3/Signal/BedGraph.pyx
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<a href="#4b52f94ac98b29ee002eea5fc643cc1cf408bbc1">
MACS3/Signal/PeakVariants.pyx
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<a href="#e392e9654e22b1eeaa3482e2f1478e3a664c223c">
MACS3/Signal/Pileup.pyx
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<a href="#9ad7d290af8b024d8bc3dfaa58f020b8dd6e3d18">
MACS3/Utilities/Constants.py
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#484b2859e5147aeca220ecf699db8396df5046f5">
bin/macs3
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<a href="#d1e5f2ed67d4b695ec7949ca07644776c8c8ec11">
conda/macs3/meta.yaml
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
debian/clean
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<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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debian/patches/keep_debug
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debian/patches/link-libm.patch
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debian/patches/series
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docs/Advanced_Step-by-step_Peak_Calling.md
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docs/INSTALL.md
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docs/bdgbroadcall.md
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docs/bdgcmp.md
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docs/bdgdiff.md
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<a href="#e3a524406ccb4feff6c13e095c33524046fbb2ff">
docs/bdgopt.md
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<a href="#499b3d9c3775e26b12fcb6125f68c56f18c744cb">
docs/bdgpeakcall.md
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The diff was not included because it is too large.
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