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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/d5699b50c4f179c6a6af8ae2be074e6e38f1c045">d5699b50</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-11-24T11:45:48+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 39.06+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/edc5df714c5a6f2edd81fff0358bdf2ab995963a">edc5df71</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-11-24T11:45:57+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/39.06+dfsg'
Update to upstream version '39.06+dfsg'
with Debian dir 70e9596f36dab942ba0469d3cfebfd787736eb96</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/28a81ccbc25c1dfe460e7e8ea95106307649e1fe">28a81ccb</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-11-24T11:47:05+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>java_syntax.patch: delete: applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/754b4366ceb67df46e39548cf203102ea61af01d">754b4366</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-11-24T11:47:46+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>32bit.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/ab9a6e0a4b90f0e5449187b41e44206a3cc74897">ab9a6e0a</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-11-24T11:55:39+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>ready to upload to unstable.
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#82da29b55529afb693c1059f9b64038ff6235464">
bbcrisprfinder.sh
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<li class="file-stats">
<a href="#67d907d61087ac2bc1410f5791ecd5d94426cc74">
bbduk.sh
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<li class="file-stats">
<a href="#46288c4e61cdadc81fa9d617eb8255dc9c47282d">
bbmerge.sh
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<li class="file-stats">
<a href="#3a1986fa996843fd189501d65900ee801c1a9bf2">
calcmem.sh
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<li class="file-stats">
<a href="#4a18c3c5eec989524e435c6521f755ab31034d3a">
clumpify.sh
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<a href="#f782d3f5f2a0caac382364db133ebecf2eb318b5">
current/align2/RandomReads3.java
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<a href="#33ee4412df1c6f619f74f6ca8cdaf3183a76086f">
current/barcode/BarcodeStats.java
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<a href="#124b75f2d25621f8ed8588f3a09b91374e6b3b61">
current/barcode/CorrelateBarcodes.java
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<a href="#d89ce85c8239a13f62bc6749a5518b9eb09e762f">
current/cardinality/CardinalityTracker.java
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<a href="#30dd7cd1b21617f46c7cdc8949d011f1baa719ea">
current/cluster/ReadTag.java
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<a href="#6c0c62175c30064838cfbadc10e3f734f871c160">
current/consensus/BaseNode.java
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<a href="#8231f81aa899337b58c60d2eb06975e2b1d611af">
current/covid/SummarizeCoverage.java
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<a href="#3f25a72a65a432a984eb4dba0d7643305f6451b6">
current/dna/AminoAcid.java
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<a href="#dd3a6744b95f9ef9f7026a0d84eb2228ec896ef3">
current/fileIO/ByteFile1.java
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<a href="#a7b295a8bc85d8cdd1ef2ee5eff1375704e771b9">
current/fileIO/ReadWrite.java
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<a href="#e5b240461dcfc87ec9e8561dc4c4083d6c0f8b4e">
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current/fun/Crunch
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<a href="#f770516c1b1ba3275aad0d0985c44bad8e92a7f6">
current/gff/CutGff.java
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<a href="#f890bfd1d72708a56b92ece8de5c4d7f2a41d2d0">
current/jgi/CountBarcodes2.java
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current/gff/ParseCrispr.java
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<a href="#f593cf1caa508c442cb510fd4d3d336efe335658">
current/hiseq/CycleTracker.java
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<a href="#87e09ce245832e04b8a3d06edd667cfac9295e33">
current/icecream/IceCreamFinder.java
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<a href="#b535deb381b48e8b550afafea53c094999335a10">
current/icecream/ReformatPacBio.java
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<a href="#ef637b79f50f8c86ed30d6bb954abe22a55553ea">
current/jgi/AssemblyStats2.java
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<a href="#06a7eaaf098b8d2e7c18a48b5d98671b027f6af9">
current/jgi/BBDuk.java
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<li class="file-stats">
<a href="#8e80fc83372d80183d64fca45f7913aa3f58f416">
current/jgi/BBDuk2.java
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<a href="#4bfd4f01b5a66f9690be4616192c362dad7040a7">
current/jgi/BBMask.java
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<a href="#50a906cdcb096e16dea22cadd5e7eb2050e18375">
current/jgi/BBMerge.java
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<a href="#e08755fc629d88795949a0af809169671bbf8719">
current/jgi/CallPeaks.java
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<a href="#110a92dae2f611e2ee66abbd750294f557ac0f08">
current/jgi/CheckStrand2.java
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<li class="file-stats">
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current/jgi/CorrelateBarcodes.java
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
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</div>
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<a href="https://salsa.debian.org/med-team/bbmap/-/compare/1b61c58e6d914cfc5d8a7b7a50bd59c172b680b4...ab9a6e0a4b90f0e5449187b41e44206a3cc74897">View it on GitLab</a>.
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