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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/sra-sdk">Debian Med / sra-sdk</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/7e3e1143c7ad82ccf34381e7f01b6cf4dfc426e8">7e3e1143</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2023-12-09T18:49:53+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.0.9+dfsg</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#8aff1fb8da0999d8ee716133633d0de7f173339b">
build/Makefile.env
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<li class="file-stats">
<a href="#c9512c0b1798e84b5d6a945ad880784dab140a53">
build/Makefile.vers
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<li class="file-stats">
<a href="#f2eba9c79ef445c608c5970aef78ace393fe70b1">
build/docker/Dockerfile.build-alpine
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<li class="file-stats">
<a href="#1781271ab3cce0bace72226785eefc9b2143f133">
build/docker/Makefile
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<li class="file-stats">
<a href="#18d9629e5347b6cf631720382126ca1cd06c66b2">
build/docker/README.md
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<li class="file-stats">
<a href="#daf1875832f8ed4e6a8fc07e365899f0adedf3bd">
<span class="new-file">
+
build/docker/find-parts.pl
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<li class="file-stats">
<a href="#f5aa8741e30275380fa236444586ca03b6a58fb4">
build/env.cmake
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<li class="file-stats">
<a href="#744a3234c61ba08069c981534ad79c7847ccfee8">
libs/ascp/CMakeLists.txt
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<li class="file-stats">
<a href="#b4e0efa4fcdb69e6ccaa038c3b35bb1df05d3345">
libs/ascp/linux/ascp-path.c
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<li class="file-stats">
<a href="#8241f7f01d16627bb5141a1a0a2cabe684e7096a">
libs/ascp/unix/connect.c
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<li class="file-stats">
<a href="#d23fcea7f9f301b00b346a55c39d67cb93b73b52">
libs/diagnose/diagnose.c
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<li class="file-stats">
<a href="#431846c4a542b700764ec36f89e6f0096e2650c0">
libs/general-writer/general-writer.cpp
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<a href="#e0dbbc0be5733b107011f61b3c97d813ed4c798e">
libs/general-writer/gw-dumper.cpp
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<a href="#6891870efb07404a4e3be80602d629252faa9fb8">
tools/loaders/sharq/bm/bmbmi2.h

libs/inc/bm/LICENSE
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<li class="file-stats">
<a href="#371e979ff063c0734e4dccaafa26a427689cc8a8">
tools/loaders/bam-loader/bm/bm.h

libs/inc/bm/bm.h
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<li class="file-stats">
<a href="#b4ae3d2a86a2a6f94e4aeea099320f82e5e2a80a">
tools/loaders/bam-loader/bm/bm3vl.h

libs/inc/bm/bm3vl.h
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<li class="file-stats">
<a href="#f23350a623abf9413e323ef83c3d131004af0666">
tools/loaders/bam-loader/bm/bm64.h

libs/inc/bm/bm64.h
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<li class="file-stats">
<a href="#4421ca2590b811599dd5fb7df19b80ad35eb37be">
tools/loaders/bam-loader/bm/bmaggregator.h

libs/inc/bm/bmaggregator.h
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<li class="file-stats">
<a href="#3777dcba2f2dc249be009b6256614dea2823d086">
tools/loaders/bam-loader/bm/bmalgo.h

libs/inc/bm/bmalgo.h
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<li class="file-stats">
<a href="#5f2acee3e6dc4a68509f2797ff9192b5f3f27bb5">
tools/loaders/bam-loader/bm/bmalgo_impl.h

libs/inc/bm/bmalgo_impl.h
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<li class="file-stats">
<a href="#0e678c2349abe15bfd8b4b0cb95335d0f1a6981e">
tools/loaders/bam-loader/bm/bmalgo_similarity.h

libs/inc/bm/bmalgo_similarity.h
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<li class="file-stats">
<a href="#38fde679ee9c126232808fa467bcddc7ab2e94f0">
tools/loaders/bam-loader/bm/bmalloc.h

libs/inc/bm/bmalloc.h
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<li class="file-stats">
<a href="#acb59b9ff7dd096778d01be6468181f9dd67c8f7">
tools/loaders/bam-loader/bm/bmavx2.h

libs/inc/bm/bmavx2.h
</a>
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<li class="file-stats">
<a href="#3c32514379024922210df513f6e3b6000f644553">
tools/loaders/bam-loader/bm/bmavx512.h

libs/inc/bm/bmavx512.h
</a>
</li>
<li class="file-stats">
<a href="#90ac04d9ecf723bd483a0f29d2079534bddba9b0">
tools/loaders/bam-loader/bm/bmblocks.h

libs/inc/bm/bmblocks.h
</a>
</li>
<li class="file-stats">
<a href="#626894e9566ce6e521078bb4c4c5408ee8f0fa77">
tools/loaders/bam-loader/bm/bmbmatrix.h

libs/inc/bm/bmbmatrix.h
</a>
</li>
<li class="file-stats">
<a href="#6a0ff00959778b450d5b9165787c676b77c70031">
tools/loaders/bam-loader/bm/bmbmi1.h

libs/inc/bm/bmbmi1.h
</a>
</li>
<li class="file-stats">
<a href="#7ec4826b5b643f150ada4482f89adf8b5b783aa7">
tools/loaders/bam-loader/bm/bmbmi2.h

libs/inc/bm/bmbmi2.h
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

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