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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/ugene">Debian Med / ugene</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/2c27557f5b7248dc4e193a24d5312ab9e81d5e3e">2c27557f</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-09T20:12:58+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 49.1+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/9925030d3f1cf5203436f3469a482c6e55aa4906">9925030d</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-09T20:13:22+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/49.1+dfsg'
Update to upstream version '49.1+dfsg'
with Debian dir 2826eb4e73e57408b00c2cb0db4fd8632818b6ff</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/8c1148e6ddfb81ff03de45d73ac7d12ef95f0ac9">8c1148e6</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:40:18+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Rewriting d/copyright
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/3b53e6f7c458eb802e1c8964016a4c29d96fa6dc">3b53e6f7</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:41:20+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/6b4a766b5153f6008b762fb990998073e1023b68">6b4a766b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:43:05+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating install paths
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/b21ae113a2bf1ade9bfab33d47b806b08601bcd5">b21ae113</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:43:32+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fixing spelling mistakes
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/0679b31a496b274c29ba4bc6a9e2d8bf34831434">0679b31a</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:43:58+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Using python3 instead of python in shebangs
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/8fba53714a41b301715df332d7c994470298d38e">8fba5371</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:44:24+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Setting the runpaths so that private shared libraries can be found
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/5796d16be318025dd27f8e9fef269297e37aa5ec">5796d16b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:44:40+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fixing Lintian override syntax
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/c0ba776a2c99b50a314c154a6ae5044698a4c4fe">c0ba776a</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:45:30+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Overriding Lintian warnings due to false positives
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/213ac0d10de2619fe68050ae8e590aca83308ce6">213ac0d1</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:47:46+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/428723ac237bf6fe9dd9c748de7fcc495d8b463f">428723ac</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:49:37+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Shipping to main instead of non-free
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/ugene/-/commit/1d32140b407af4a6a0fb3e2a3fc7e8cb63a37b9d">1d32140b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-12-12T14:50:02+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
24 changed files:
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<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#a0d25730b2d6bf0a55960c1cea70273caeb89cbd">
data/cmdline/align-kalign.uwl
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<a href="#def00eaae844345f0aa1a21d2a2ae8349ab23217">
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data/cmdline/align-tcoffee.uwl
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<a href="#7296f514cec8fe445ec1477a5552deb3028eee43">
data/cmdline/extract_consensus_sequence.uwl
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<a href="#50c9b2a91574e6ac4dc04e71d0e75e9ec8d91b2e">
data/cmdline/remote-request.uwl
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data/enzymes/2013_08_01.bairoch.gz
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data/enzymes/2023_02_25.bairoch.gz
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<a href="#6f13f812ee0c9c3d38c97b78527a64e11050f1ef">
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data/primer3/presets/Default.txt
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data/primer3/presets/RPA.txt
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data/workflow_samples/Scenarios/filter_matched.uwl
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<a href="#ecde9ca2fbe2e057cc093d1e048c504af532f929">
data/workflow_samples/Scenarios/find_inverted_repeats.uwl
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<a href="#7374ca5fa3bfd9539d1f008f80d700bbc24c66a8">
data/workflow_samples/Scenarios/find_sequences.uwl
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<a href="#976c703552512d26b93a3bd62dff399a9a7f3f98">
data/workflow_samples/Scenarios/gene_by_gene_report.uwl
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<a href="#9bf019db849aebbd1a26e84acb29fe8b6ebb7aea">
data/workflow_samples/Scenarios/group_primers_pairs.uwl
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<a href="#9fb18fae731f6d0433a22bb57ea91655ea5b6533">
data/workflow_samples/Scenarios/merge_sequence_annotation.uwl
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<a href="#44ae5464ffd4e0c6556c97800170f54b0b192c07">
data/workflow_samples/Scenarios/pcr.uwl
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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debian/not-installed
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debian/patches/do_not_build_phylip.patch
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debian/patches/do_not_build_phylip_and_psipred.patch
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debian/patches/series
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debian/patches/set_rpath.patch
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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