<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/bcftools">Debian Med / bcftools</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/f4398f7040638913ef608ac56c9e955cc7a27a89">f4398f70</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T11:48:48+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.19</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#cab3264be7ac8d7f9421a4fc2db77c8dab7789c2">
abuf.c
</a>
</li>
<li class="file-stats">
<a href="#641a99f352653ad820a68a93f5671b3ec50e4ef6">
bcftools.h
</a>
</li>
<li class="file-stats">
<a href="#5befc09eb73b7a9fec50948d990c5a79bd742c7c">
call.h
</a>
</li>
<li class="file-stats">
<a href="#cb9f132eb7ad36b0e293b828436290909d1203e3">
convert.c
</a>
</li>
<li class="file-stats">
<a href="#e0008ec0cda6d502580a671cc7660a9d53234e90">
convert.h
</a>
</li>
<li class="file-stats">
<a href="#155bba183d1c525bb29e6a8f0a6f4d5203059fad">
doc/bcftools.1
</a>
</li>
<li class="file-stats">
<a href="#10c81da16b14b79039d2fb8ea89464665683576e">
doc/bcftools.html
</a>
</li>
<li class="file-stats">
<a href="#9a2b5aa2613ebd6ba3159cd62c01d98d9d354e6a">
doc/bcftools.txt
</a>
</li>
<li class="file-stats">
<a href="#3c41fd34a6f6633d79f03c873c93a1b2fe6e12cd">
filter.c
</a>
</li>
<li class="file-stats">
<a href="#57b07d9d9d4be0408a7601113faf3875f4c92f91">
gff.c
</a>
</li>
<li class="file-stats">
<a href="#218b1629cda113dedd236d2181c3a1c0e7a61706">
gff.h
</a>
</li>
<li class="file-stats">
<a href="#190c03a39908a06b7e0858da5d51e4a7de4947b1">
gvcf.c
</a>
</li>
<li class="file-stats">
<a href="#c9658b8851489df9abd6c4fcc77ce4b710868358">
mcall.c
</a>
</li>
<li class="file-stats">
<a href="#d6d3561ad66c91437474c71be0dc2e4a06b7a414">
plugins/split-vep.c
</a>
</li>
<li class="file-stats">
<a href="#531b6b4370d2860168a3c66dee50bd70afeb0569">
plugins/trio-dnm2.c
</a>
</li>
<li class="file-stats">
<a href="#66244817901ff22c5509ef76008c3964b446b821">
read_consensus.c
</a>
</li>
<li class="file-stats">
<a href="#63e40d4d12ebc9aeb1db631f6d554894b027f095">
test/annotate19.1.out
</a>
</li>
<li class="file-stats">
<a href="#d1a30ab6a772b7bf1a311929d0d00d58a3c68ec9">
test/annotate19.2.out
</a>
</li>
<li class="file-stats">
<a href="#81b056819792016d0916409034b50a643b9637d3">
<span class="new-file">
+
test/annotate19.3.out
</span>
</a>
</li>
<li class="file-stats">
<a href="#7638ed0cc1611ab3ea37e5208f10b65909a50722">
<span class="new-file">
+
test/annotate19.4.out
</span>
</a>
</li>
<li class="file-stats">
<a href="#f321c1e42ccbc5a1666c14d6956d7c27be78ebc3">
<span class="new-file">
+
test/annotate19.5.out
</span>
</a>
</li>
<li class="file-stats">
<a href="#f8a9fcd31c7d2e83d75b01bd4bb76618f19bfa05">
<span class="new-file">
+
test/annotate19.6.out
</span>
</a>
</li>
<li class="file-stats">
<a href="#d0d14d8a915287d5a9e7ef95a8f31626a3c78607">
<span class="new-file">
+
test/annotate19.7.out
</span>
</a>
</li>
<li class="file-stats">
<a href="#6069bcd1cbe74aad68a3210294fe2643018d5c41">
test/annotate19.dst.vcf
</a>
</li>
<li class="file-stats">
<a href="#31e90aa18c3af415365dd991d4d84ba42187ebf1">
test/annotate19.src.vcf
</a>
</li>
<li class="file-stats">
<a href="#67f77410a9cafb8d24734c8593066b8ed3085d16">
<span class="new-file">
+
test/annots-mark.1.out
</span>
</a>
</li>
<li class="file-stats">
<a href="#a9e3c3185c09fe7fad12b60eec64b5fb53741f49">
<span class="new-file">
+
test/annots-mark.bed
</span>
</a>
</li>
<li class="file-stats">
<a href="#df70c959ed94d9350b2f822195eef2fbf9a0ca85">
<span class="new-file">
+
test/annots-mark.vcf
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/bcftools/-/commit/f4398f7040638913ef608ac56c9e955cc7a27a89">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/bcftools/-/commit/f4398f7040638913ef608ac56c9e955cc7a27a89"}}</script>


</p>
</div>
</body>
</html>