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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/bcftools">Debian Med / bcftools</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/fbdb31030576f1c93f92347eeb87758439ee5d56">fbdb3103</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T11:48:47+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/f4398f7040638913ef608ac56c9e955cc7a27a89">f4398f70</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T11:48:48+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.19</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/cb95623357b678173f732b149da17a00114ef5dd">cb956233</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T11:49:02+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.19'
Update to upstream version '1.19'
with Debian dir 578bfb0471a276fb6ce06ed48158528d41d893e5</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/aef2b3d622029be95028709e343b3c2c956e44fa">aef2b3d6</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T11:50:28+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix-bus-error-armhf.patch: delete: applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/819d4df280efceeec928b4c67211ac8425b55515">819d4df2</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T11:51:07+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>skip_new_test_failing_on_32bit.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/2da8bdef213c539c9720bcad1e67822523d7243b">2da8bdef</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T11:51:20+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>tests-pluginpath.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/e05309b8973be35e7975bc4d377230d4e11e1b33">e05309b8</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T12:13:39+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>typo.patch: new: fix typos caught by lintian.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/df8d5197eb9ddb8ec95c8c081cfa5adaedd34c97">df8d5197</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2023-12-15T12:13:46+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>ready to upload to unstable.
</pre>
</li>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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</li>
<li class="file-stats">
<a href="#cab3264be7ac8d7f9421a4fc2db77c8dab7789c2">
abuf.c
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<li class="file-stats">
<a href="#641a99f352653ad820a68a93f5671b3ec50e4ef6">
bcftools.h
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<li class="file-stats">
<a href="#5befc09eb73b7a9fec50948d990c5a79bd742c7c">
call.h
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<li class="file-stats">
<a href="#cb9f132eb7ad36b0e293b828436290909d1203e3">
convert.c
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<li class="file-stats">
<a href="#e0008ec0cda6d502580a671cc7660a9d53234e90">
convert.h
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#3e989ea486889d3111e8610914bc3c92b38fbd87">
<span class="deleted-file">
−
debian/patches/fix-bus-error-armhf.patch
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</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#a6bcfca35e835c1297fe9b2d4cfe4630534f3ea5">
debian/patches/skip_new_test_failing_on_32bit.patch
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<li class="file-stats">
<a href="#b788ef82e9659c0a0dd0df2a4de49f560c0cc6d3">
debian/patches/tests-pluginpath.patch
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<li class="file-stats">
<a href="#738bfe9eb140bee362e519ae990e19d7391f9b5f">
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debian/patches/typo.patch
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<li class="file-stats">
<a href="#155bba183d1c525bb29e6a8f0a6f4d5203059fad">
doc/bcftools.1
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<li class="file-stats">
<a href="#10c81da16b14b79039d2fb8ea89464665683576e">
doc/bcftools.html
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<li class="file-stats">
<a href="#9a2b5aa2613ebd6ba3159cd62c01d98d9d354e6a">
doc/bcftools.txt
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<li class="file-stats">
<a href="#3c41fd34a6f6633d79f03c873c93a1b2fe6e12cd">
filter.c
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<li class="file-stats">
<a href="#57b07d9d9d4be0408a7601113faf3875f4c92f91">
gff.c
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<a href="#218b1629cda113dedd236d2181c3a1c0e7a61706">
gff.h
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<a href="#190c03a39908a06b7e0858da5d51e4a7de4947b1">
gvcf.c
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<a href="#c9658b8851489df9abd6c4fcc77ce4b710868358">
mcall.c
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<a href="#d6d3561ad66c91437474c71be0dc2e4a06b7a414">
plugins/split-vep.c
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<a href="#531b6b4370d2860168a3c66dee50bd70afeb0569">
plugins/trio-dnm2.c
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<a href="#66244817901ff22c5509ef76008c3964b446b821">
read_consensus.c
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<a href="#63e40d4d12ebc9aeb1db631f6d554894b027f095">
test/annotate19.1.out
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<a href="#d1a30ab6a772b7bf1a311929d0d00d58a3c68ec9">
test/annotate19.2.out
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test/annotate19.3.out
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test/annotate19.4.out
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test/annotate19.5.out
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test/annotate19.6.out
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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