<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Charles Plessy pushed to branch upstream at <a href="https://salsa.debian.org/med-team/last-align">Debian Med / last-align</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/ac00796ebb7461b0105e25a66a8b3a6c1b330ccb">ac00796e</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2023-12-18T02:49:54+00:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1519</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#217c6bc12768d15897bf0441140820b8ec85a125">
bin/last-dotplot
</a>
</li>
<li class="file-stats">
<a href="#2eec104bd40706dceb555b7fffb342760f3cbc59">
bin/last-train
</a>
</li>
<li class="file-stats">
<a href="#131858441b2e21493a51b4090390c70b8f456d72">
<span class="new-file">
+
data/RY64-13.seed
</span>
</a>
</li>
<li class="file-stats">
<a href="#6da0343fd1e96c9faaa35ff4e058c0bb04191144">
doc/last-cookbook.rst
</a>
</li>
<li class="file-stats">
<a href="#3005ac7967e4a8278470a34d68f44dcd2b1b63cd">
doc/last-dotplot.rst
</a>
</li>
<li class="file-stats">
<a href="#7d8e0289360832d7ecdeea5163631840a96266ca">
doc/last-evalues.rst
</a>
</li>
<li class="file-stats">
<a href="#977fadb853a729d73f897f1532ab693a2edb5af2">
doc/last-seeds.rst
</a>
</li>
<li class="file-stats">
<a href="#e6aa9861192a0b058083f4ef525daf93befa49e4">
doc/last-split.rst
</a>
</li>
<li class="file-stats">
<a href="#6d861ad2ad3211511db76f729355bd88ffd88a1f">
doc/last-train.rst
</a>
</li>
<li class="file-stats">
<a href="#655563a3536f02cd797e48e247008e6904b2cf24">
doc/last-tuning.rst
</a>
</li>
<li class="file-stats">
<a href="#1aed97b2ebfde2d21c24639963d42434bdcfddb8">
doc/lastal.rst
</a>
</li>
<li class="file-stats">
<a href="#92d9b0529e219d061bbcde273352ff9d2523754c">
doc/lastdb.rst
</a>
</li>
<li class="file-stats">
<a href="#0c0610d12d971107a85160c6a927e94a1062a01a">
makefile
</a>
</li>
<li class="file-stats">
<a href="#5e55dbeefff2057b414960d9467d183920e31b8a">
src/Alignment.cc
</a>
</li>
<li class="file-stats">
<a href="#bd17e03c676d289c9cc5bb117da6d9d2bde74764">
src/Alignment.hh
</a>
</li>
<li class="file-stats">
<a href="#ab919b3eb596acbd0affb15613fb99fee03165d8">
src/Alphabet.cc
</a>
</li>
<li class="file-stats">
<a href="#50bbab11fc8cfa2a0b2a909b040fb5e75e3bf421">
src/Alphabet.hh
</a>
</li>
<li class="file-stats">
<a href="#76a46dca9f85ee73b2a8d67a89f4b9bf80c34b4b">
src/Centroid.cc
</a>
</li>
<li class="file-stats">
<a href="#7cc18ac8f8022614b0ff31ec1eeb4152cd88880e">
src/Centroid.hh
</a>
</li>
<li class="file-stats">
<a href="#5f9dbaf068df9da9d036ea6546a588a0c71778be">
src/LastEvaluer.cc
</a>
</li>
<li class="file-stats">
<a href="#9daaf12af97fab793ad96ae21b30f9f8cc0e1ec6">
<span class="new-file">
+
src/LastEvaluerData.hh
</span>
</a>
</li>
<li class="file-stats">
<a href="#4b7be8c3b80efc62977b307791d1a304c23e1fa4">
src/LastalArguments.cc
</a>
</li>
<li class="file-stats">
<a href="#166cfea9495f22785b4b042c1f067c32d00762cb">
src/MultiSequence.cc
</a>
</li>
<li class="file-stats">
<a href="#de5a928be30a99dcb150a5f687171caed2e9c00c">
src/MultiSequence.hh
</a>
</li>
<li class="file-stats">
<a href="#cd02526d366c6da910b92885df9a61de1e0d3b4c">
src/SegmentPair.cc
</a>
</li>
<li class="file-stats">
<a href="#8f3dcb98b241f5b872730585aeca6294b7f859bc">
src/SegmentPair.hh
</a>
</li>
<li class="file-stats">
<a href="#cbc8995f0e52a1d4b5b18e7df92014c01ec2dea1">
src/SubsetSuffixArray.cc
</a>
</li>
<li class="file-stats">
<a href="#bb715be022c826aae5cd901677082c4701d4254f">
src/SubsetSuffixArray.hh
</a>
</li>
<li class="file-stats">
<a href="#a769b4c6047b484a507a8d8b92ec8a622dc48140">
src/SubsetSuffixArraySearch.cc
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/last-align/-/commit/ac00796ebb7461b0105e25a66a8b3a6c1b330ccb">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/last-align/-/commit/ac00796ebb7461b0105e25a66a8b3a6c1b330ccb"}}</script>


</p>
</div>
</body>
</html>