<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Charles Plessy pushed to branch master at <a href="https://salsa.debian.org/med-team/last-align">Debian Med / last-align</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/418bcdcbc8e13cda6dd038e0e5477bb7ad122e48">418bcdcb</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2023-12-18T02:49:01+00:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>last*5* commands were removed recently upstream
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/ac00796ebb7461b0105e25a66a8b3a6c1b330ccb">ac00796e</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2023-12-18T02:49:54+00:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1519</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/f186b6587c00f30a3ea2beb8d720d3b38559d27e">f186b658</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2023-12-18T02:49:54+00:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/6071ba8715ab099beafbbeb0cb59e6a2aba9cd79">6071ba87</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2023-12-18T02:49:59+00:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1519'

Update to upstream version '1519'
with Debian dir 66ee9ca65618d81334627e3403ba4b3dd44fb528</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/e790df9b84a80cad8b80b1117032b3038a830e9c">e790df9b</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2023-12-18T02:55:40+00:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/43e18492969c6fb7c5e2cc520a4313046e7008d2">43e18492</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2023-12-18T04:17:31+00:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Remove obsolete override
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/3dd7a01580d98ac29e034edec7bb1c207879fea7">3dd7a015</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2023-12-18T04:22:31+00:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh timestamp.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#217c6bc12768d15897bf0441140820b8ec85a125">
bin/last-dotplot
</a>
</li>
<li class="file-stats">
<a href="#2eec104bd40706dceb555b7fffb342760f3cbc59">
bin/last-train
</a>
</li>
<li class="file-stats">
<a href="#131858441b2e21493a51b4090390c70b8f456d72">
<span class="new-file">
+
data/RY64-13.seed
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#efc7fe57b5983b0283c6410fceef7e74f687aeb5">
debian/lintian-overrides
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#6da0343fd1e96c9faaa35ff4e058c0bb04191144">
doc/last-cookbook.rst
</a>
</li>
<li class="file-stats">
<a href="#3005ac7967e4a8278470a34d68f44dcd2b1b63cd">
doc/last-dotplot.rst
</a>
</li>
<li class="file-stats">
<a href="#7d8e0289360832d7ecdeea5163631840a96266ca">
doc/last-evalues.rst
</a>
</li>
<li class="file-stats">
<a href="#977fadb853a729d73f897f1532ab693a2edb5af2">
doc/last-seeds.rst
</a>
</li>
<li class="file-stats">
<a href="#e6aa9861192a0b058083f4ef525daf93befa49e4">
doc/last-split.rst
</a>
</li>
<li class="file-stats">
<a href="#6d861ad2ad3211511db76f729355bd88ffd88a1f">
doc/last-train.rst
</a>
</li>
<li class="file-stats">
<a href="#655563a3536f02cd797e48e247008e6904b2cf24">
doc/last-tuning.rst
</a>
</li>
<li class="file-stats">
<a href="#1aed97b2ebfde2d21c24639963d42434bdcfddb8">
doc/lastal.rst
</a>
</li>
<li class="file-stats">
<a href="#92d9b0529e219d061bbcde273352ff9d2523754c">
doc/lastdb.rst
</a>
</li>
<li class="file-stats">
<a href="#0c0610d12d971107a85160c6a927e94a1062a01a">
makefile
</a>
</li>
<li class="file-stats">
<a href="#5e55dbeefff2057b414960d9467d183920e31b8a">
src/Alignment.cc
</a>
</li>
<li class="file-stats">
<a href="#bd17e03c676d289c9cc5bb117da6d9d2bde74764">
src/Alignment.hh
</a>
</li>
<li class="file-stats">
<a href="#ab919b3eb596acbd0affb15613fb99fee03165d8">
src/Alphabet.cc
</a>
</li>
<li class="file-stats">
<a href="#50bbab11fc8cfa2a0b2a909b040fb5e75e3bf421">
src/Alphabet.hh
</a>
</li>
<li class="file-stats">
<a href="#76a46dca9f85ee73b2a8d67a89f4b9bf80c34b4b">
src/Centroid.cc
</a>
</li>
<li class="file-stats">
<a href="#7cc18ac8f8022614b0ff31ec1eeb4152cd88880e">
src/Centroid.hh
</a>
</li>
<li class="file-stats">
<a href="#5f9dbaf068df9da9d036ea6546a588a0c71778be">
src/LastEvaluer.cc
</a>
</li>
<li class="file-stats">
<a href="#9daaf12af97fab793ad96ae21b30f9f8cc0e1ec6">
<span class="new-file">
+
src/LastEvaluerData.hh
</span>
</a>
</li>
<li class="file-stats">
<a href="#4b7be8c3b80efc62977b307791d1a304c23e1fa4">
src/LastalArguments.cc
</a>
</li>
<li class="file-stats">
<a href="#166cfea9495f22785b4b042c1f067c32d00762cb">
src/MultiSequence.cc
</a>
</li>
<li class="file-stats">
<a href="#de5a928be30a99dcb150a5f687171caed2e9c00c">
src/MultiSequence.hh
</a>
</li>
<li class="file-stats">
<a href="#cd02526d366c6da910b92885df9a61de1e0d3b4c">
src/SegmentPair.cc
</a>
</li>
<li class="file-stats">
<a href="#8f3dcb98b241f5b872730585aeca6294b7f859bc">
src/SegmentPair.hh
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/last-align/-/compare/a09af6b609cb9c773c564a974a8b94a5c5461f24...3dd7a01580d98ac29e034edec7bb1c207879fea7">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>