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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/nextflow">Debian Med / nextflow</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/62618056573f61cf46be48651cb64e1767ee75cf">62618056</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-08-18T14:12:28+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Revising d/watch and repack information in d/copyright
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/b028069d1f3ed219d94df4a891f21a37911c5d83">b028069d</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-08-18T14:12:35+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 23.04.3+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/49784a17d728a7f68249d2b902d836921ce29bdd">49784a17</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-08-18T14:12:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/23.04.3+dfsg'
Update to upstream version '23.04.3+dfsg'
with Debian dir 149839f767631b14870bfabd526b318fa5e6c34c</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/4f226bee7d367addbb2972415b8c6cd94de7018c">4f226bee</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-08-18T14:44:34+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/567535b2eb6de3c98804e06ff7b052a87388f4cd">567535b2</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-08-18T14:45:25+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/41e59194c2e611f07cdd6c58ca4e757e354da83f">41e59194</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-08-18T14:50:59+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Building nf-tower module again
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/7b65a18b46728db1de59729cd8db8ac95ca0785d">7b65a18b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-08-19T11:18:54+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Merging patches related to build.gradle files inadequacies
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/00989bb85ad96433f4cd827c2589f9763e248070">00989bb8</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2023-08-21T08:47:18+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Using Debian-packaged version of kryo
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/4ceff1d42b100f5f04b22ab0d884beb79fb2ba96">4ceff1d4</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:14:34+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adding useful Maven rules and their packages as B-D, ignoring useless ones
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/68fada1d0a4402d4cce2e4d31c720040b8567f7c">68fada1d</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:15:20+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Reworking the build.gradle files to comply with Debian-packaged gradle
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/7afc7bb6ca5717a9c276a3d9a29fedec4fb7169d">7afc7bb6</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:16:22+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Omitting Amazon and Azure in more places
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/914cc1dfaac311c06e444ad150bb42db9bd3fca1">914cc1df</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:16:50+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Complying with Debian-packaged Groovy in more places
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/f83993950eadf74bc48c2faa5321e0d6a7f3fb8e">f8399395</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:17:00+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/d55ad0c1d0f4ef5049d39ea42895eb744f35f5ad">d55ad0c1</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:17:31+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adapting syntax for Debian-packaged pf4j
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/c51bb2d1c1f5859e011f32c1ec7b8af325ffdf9f">c51bb2d1</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:17:59+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adapting syntax for Debian-packaged okhttp3
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/a8191c197726487c3e5a4d58a562cee98ebcb706">a8191c19</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:18:25+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adapting Instantiator strategy given the ones that are available in Debian-packages kryo
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
27 changed files:
</h4>
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.travis.yml
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<a href="#2f473ef69010f24d2546e13263bcc2c49befd2f3">
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CITATION.cff
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<li class="file-stats">
<a href="#3f454a98e586d1aa0d322e19afd5e67e08f2d3c8">
CONTRIBUTING.md
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<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<a href="#fe71871083ca490e6bc0da33fb48ce231f820a94">
NOTICE
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
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<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
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<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
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buildSrc/README.md
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buildSrc/build.gradle
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<a href="#a5a0b3fae275f223cffcec7659a6767350435221">
buildSrc/src/main/groovy/io/nextflow/gradle/tasks/GithubRepositoryPublisher.groovy
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buildSrc/src/main/groovy/io/nextflow/gradle/tasks/GithubUploader.groovy
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buildSrc/src/main/groovy/io/nextflow/gradle/tasks/S3Upload.groovy
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buildSrc/src/main/groovy/io/nextflow/gradle/util/BucketTokenizer.groovy
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buildSrc/src/main/groovy/io/nextflow/gradle/util/GithubClient.groovy
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changelog.txt
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config/codenarc/codenarc.groovy
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config/codenarc/codenarc.xml
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debian/changelog
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debian/control
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debian/copyright
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debian/maven.ignoreRules
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debian/maven.rules
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debian/patches/plugins_build.patch
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debian/patches/build.patch
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debian/patches/changing_grengine_package.patch
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debian/patches/circumvent_fixtures.patch
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The diff was not included because it is too large.
</h5>
</div>
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