<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/a0dad977373c81e3886eb8694b2f283989bdd911">a0dad977</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T10:43:08+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.17.1+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/fa708a58c0eef99616a3f9377be32ad02adc779a">fa708a58</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T10:45:02+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.17.1+dfsg'

Update to upstream version '2.17.1+dfsg'
with Debian dir 4319b260a1be352883b66da4a92f4c4f88503b3d</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/fde90aeab70d9915efcfc1e4c1fe20dfe4807725">fde90aea</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:20:05+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating Maven rules
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/d7a44f8e48cb9ca6552447c1d4eebf93fafb116d">d7a44f8e</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:20:43+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>B-D on junit5 for the vintage part of the tests
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/30f5436778092a54dcbbf5e72dbb179f75319520">30f54367</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:23:12+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/bc89c9261de4e4d36ef667fc7685dcea30eb687e">bc89c926</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:24:17+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Raising source/target level for the build
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/04e2e29bd9c7935dde0dbeb51bee2a7d62c24484">04e2e29b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:24:53+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Avoiding sealed interfaces, they cause errors here
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/4c31bbb9cdc83daaba87045babb0f2c1ca58f111">4c31bbb9</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:25:17+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Dropping tests using unpackaged spark
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/f87a59d3005068e382af2ce4f4b3bfdaf7b6be78">f87a59d3</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:25:40+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Omitting tests using removed blat data
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/0896fe613947235ece9b813da7638b8e317b3760">0896fe61</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:26:29+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating Lintian override for file with very long lines
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/8ba6914f66b5de9d33faf3e49d44725828517310">8ba6914f</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:28:09+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing d/copyright
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/ca80bc0ce4d0a3f1ef8b8175b40d637827f6c7cc">ca80bc0c</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:29:27+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/a33c71d5800b88bf2a8436529feb915508f71f27">a33c71d5</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T19:30:16+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#4c262b04ed989bff9df1e01308174b793b9b9b1c">
<span class="deleted-file">

.github/workflows/gradle_test.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#26121dc92cd4cd9822d2e9e2b619b799bf9a51f4">
debian/maven.ignoreRules
</a>
</li>
<li class="file-stats">
<a href="#58530b38acb0fa3a65612c676abaea46c4a3f2f3">
debian/maven.rules
</a>
</li>
<li class="file-stats">
<a href="#f9271eab4da87b925b1f65845b9ce74b6c675af3">
debian/patches/gradle_dependencies.patch
</a>
</li>
<li class="file-stats">
<a href="#6c4ed25f5e241ad19588d266f9b82cd98ee1c4af">
<span class="deleted-file">

debian/patches/htsjdk4.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#b82bade5f44ca5d801fc783f14913cbfc12ab0bf">
<span class="deleted-file">

debian/patches/jide_dependency.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ea95bf3d18ec7fd0e8ef15f2478b7c8fbe01332">
<span class="new-file">
+
debian/patches/no_spark.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#a39bfa0b675b5bfb2d9e49d7d4bb342996744780">
<span class="deleted-file">

debian/patches/old_gradle_name.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#c0caa7ba42838b53ff0918c9edff2ea0c0000b18">
debian/patches/omit_aws_stuff.patch
</a>
</li>
<li class="file-stats">
<a href="#2e77e28ee59fad0e60694959cd242bba9faa2872">
<span class="new-file">
+
debian/patches/omit_blat_tests.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#b0b80f3fb09e481f2c9578ea6abe768b31945bce">
<span class="new-file">
+
debian/patches/opening_sealed_interface.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#158c9a83bf6361eb3dab802707c2ce0bb9662494">
debian/patches/skip_tests_network.patch
</a>
</li>
<li class="file-stats">
<a href="#f79b772ab17cd369493124d6be49feaad25145ee">
<span class="new-file">
+
debian/patches/source_target_level.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#be3a13aeb161c9f255cec474018169e8cab1f5b0">
debian/patches/using_home_made_icons.patch
</a>
</li>
<li class="file-stats">
<a href="#85ccdeeb03055211183e48520592d9a93592b330">
debian/source/lintian-overrides
</a>
</li>
<li class="file-stats">
<a href="#0b3e33619677413fe8f879987c9e0357046fe604">
<span class="new-file">
+
docs/index.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#d0411ab2ff129bc3cc48ef35541ae1588e95b79e">
test/web/IGV_64.gif

docs/web/IGV_64.gif
</a>
</li>
<li class="file-stats">
<a href="#6bd1e641fa8437e03ab4400962163623a6b83138">
test/web/IGV_64.jpeg

docs/web/IGV_64.jpeg
</a>
</li>
<li class="file-stats">
<a href="#ab0b65c28d6b1034e6bc0f49c30f529032c3673c">
test/web/IGV_64.png

docs/web/IGV_64.png
</a>
</li>
<li class="file-stats">
<a href="#f62834869cf4b041d1b9844b78309f294932c9fa">
test/web/StaticLinkExamples.html

docs/web/StaticLinkExamples.html
</a>
</li>
<li class="file-stats">
<a href="#d8f7bcda425e78262ec2ad3f8917c0cd3067f4d9">
<span class="new-file">
+
docs/web/TrackHubsDynamic.html
</span>
</a>
</li>
<li class="file-stats">
<a href="#227a9f241d513b1849afd3201650d3363a95b83d">
<span class="new-file">
+
docs/web/TrackHubsStatic.html
</span>
</a>
</li>
<li class="file-stats">
<a href="#34cc662d2ec623baac32df720b5febfe4f82cdb1">
examples/oauth/oauth-config-amazon.json
</a>
</li>
<li class="file-stats">
<a href="#094ee005eaa2077883d84c452bf36be9199cfd97">
examples/oauth/oauth-config-google.json
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/igv/-/compare/955a07ccd4629ec1cfebfae7e183c040e4406a7c...a33c71d5800b88bf2a8436529feb915508f71f27">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>