<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/nextflow">Debian Med / nextflow</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/130bf98d54726ce593fda14d33d017d7f2e35a8c">130bf98d</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:22:41+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 23.10.1+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/9f2eee80dacba122866c7332c1b5da7e46c31107">9f2eee80</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:22:58+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/23.10.1+dfsg'

Update to upstream version '23.10.1+dfsg'
with Debian dir 9ab4ade8550834d26e89b27782a12ae4f5af9aea</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/48a7bb12cab7fab2ddffdf1cfaa83e7172c4b857">48a7bb12</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:38:53+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/be2dd9df6ca9cda5b4d5072e8cf44f9d1255d544">be2dd9df</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-17T15:39:32+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating version number in d/changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/cfa68141916352c53f1f48aef972efc7334ea4d0">cfa68141</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-18T12:58:13+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adding more code portions to the existing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/nextflow/-/commit/82bd09eb0afa8881e728c8a7a2b6a99c0f5ba5d6">82bd09eb</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-02-18T12:59:59+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refrain from using virtual threads, not available in OpenJDK-17
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#1b752428aa153a75b977f971320bc5ac6ebd8468">
<span class="new-file">
+
.codespellrc
</span>
</a>
</li>
<li class="file-stats">
<a href="#626a747c8694eaae66f2afb3d1a745b045782c70">
<span class="new-file">
+
.editorconfig
</span>
</a>
</li>
<li class="file-stats">
<a href="#3f454a98e586d1aa0d322e19afd5e67e08f2d3c8">
CONTRIBUTING.md
</a>
</li>
<li class="file-stats">
<a href="#fe71871083ca490e6bc0da33fb48ce231f820a94">
NOTICE
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#ce0e5c4949726dad6dc17cd8a745baa4fd61d32d">
changelog.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#deacda022148498d3133579c43ccab5e0232a9c7">
debian/patches/build.patch
</a>
</li>
<li class="file-stats">
<a href="#ced733870f41cd0805b7e315cc0483032fe77368">
debian/patches/circumvent_fixtures.patch
</a>
</li>
<li class="file-stats">
<a href="#b1a94f276bf01e9796c83329b5c23991334b3e8e">
debian/patches/groovy_syntax.patch
</a>
</li>
<li class="file-stats">
<a href="#cc226e176eec37f462991ac36821c65509ca8183">
<span class="new-file">
+
debian/patches/no_virtual_threads_until_openjdk21.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#730c933031c459ef91e23129fde2a056cf259f0f">
debian/patches/omit_amazon_azure.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#a3cf45e4370b0069ae8445ae1b550dc268300ab1">
docker/Makefile
</a>
</li>
<li class="file-stats">
<a href="#22e7dfa107eaaf19f2ef7a964c85ce083c872c2e">
<span class="new-file">
+
docs/.dockerignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#5c847cb469b962520e9fff34906a6edc6bf0852c">
<span class="new-file">
+
docs/Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#9f7cbce127b94a94ee14460050fbff2ce58417d0">
docs/README.md
</a>
</li>
<li class="file-stats">
<a href="#b16cbb75ee857af7a9ea328b33dc51066d79eebd">
<span class="new-file">
+
docs/_static/dag.mmd
</span>
</a>
</li>
<li class="file-stats">
<a href="#87561441b63b579969ce33d0dcc734cce1d37152">
<span class="new-file">
+
docs/_static/degular/Degular-Bold.woff
</span>
</a>
</li>
<li class="file-stats">
<a href="#bb97d9088be4243638b4ddfc6518a55995a07017">
<span class="new-file">
+
docs/_static/degular/Degular-Bold.woff2
</span>
</a>
</li>
<li class="file-stats">
<a href="#9f362db75fedc91fe50e782f36690a5c980b57ea">
<span class="new-file">
+
docs/_static/degular/Degular-BoldItalic.woff
</span>
</a>
</li>
<li class="file-stats">
<a href="#961f1fe5291ad3affc1f5391faa09f50868d7820">
<span class="new-file">
+
docs/_static/degular/Degular-BoldItalic.woff2
</span>
</a>
</li>
<li class="file-stats">
<a href="#e280c5e4eb97d57b50349f0162da04e94958d2e4">
<span class="new-file">
+
docs/_static/degular/Degular-Italic.woff
</span>
</a>
</li>
<li class="file-stats">
<a href="#d30a91c33f248664ffc8038ba6abbd1d52580afd">
<span class="new-file">
+
docs/_static/degular/Degular-Italic.woff2
</span>
</a>
</li>
<li class="file-stats">
<a href="#ce30be54c5cb100cf8c2d8722db38945e86befdc">
<span class="new-file">
+
docs/_static/degular/Degular-Regular.woff
</span>
</a>
</li>
<li class="file-stats">
<a href="#aab4885f1ddf9118024fa389ba5a3585f77518f4">
<span class="new-file">
+
docs/_static/degular/Degular-Regular.woff2
</span>
</a>
</li>
<li class="file-stats">
<a href="#02bdb73e83be42f90aed16ef5685a92cc394aa68">
<span class="new-file">
+
docs/_static/favicon.ico
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/nextflow/-/compare/a8191c197726487c3e5a4d58a562cee98ebcb706...82bd09eb0afa8881e728c8a7a2b6a99c0f5ba5d6">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>