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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/macs">Debian Med / macs</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/a99a4a424051b3f044177055cafb9808a508f852">a99a4a42</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-02-23T14:26:24+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/cb1a4de288e480aa391889e006bcca891d4d4869">cb1a4de2</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-02-23T14:26:29+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.0.1</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/9198c112e24be484d9953fa19b059cb2a9bd2b21">9198c112</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-02-23T14:41:26+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/3.0.1'
Update to upstream version '3.0.1'
with Debian dir d71b4a564f4a407a122c8580270458279d02ef5d</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/46e5b22eb39c936183376d2821c9affd2ba13412">46e5b22e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-02-23T16:32:19+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patch/no_install_depends_cython.patch removed, applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/4b0afdebec23eef182dd363ff8023e10a84a716b">4b0afdeb</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-02-23T16:33:26+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Remove duplicate line from changelog.
Changes-By: lintian-brush
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#db0bcfaeb467ef23b0695e02e63dcf5710b98ae1">
.github/workflows/build-and-test-MACS3-macos12.yml
→
.github/workflows/build-and-test-MACS3-macos.yml
</a>
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<li class="file-stats">
<a href="#f8c65bdf3ca49106885041821a56af9bfe51f8f5">
<span class="new-file">
+
.github/workflows/build-and-test-MACS3-non-x64-others.yml
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<li class="file-stats">
<a href="#5fca4a277c7fe3039bd98932d6f4047be18d5b4b">
.github/workflows/build-and-test-MACS3-non-x64.yml
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<li class="file-stats">
<a href="#bd744d958559d3587bbb8603ab66f7c041535ff6">
<span class="new-file">
+
.github/workflows/build-and-test-MACS3-website.yml
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</a>
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<li class="file-stats">
<a href="#117c01e3f0933c3b1e39f3ed43e4b2a5922e4e7c">
.github/workflows/build-and-test-MACS3-x64.yml
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<li class="file-stats">
<a href="#06b0adb5510f0ca7d67f9e78c7c0a734ab166d4f">
.github/workflows/publish-to-anaconda.yml
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<li class="file-stats">
<a href="#65058c6b7d637fe4c9f4b6f029094be0baee913e">
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.github/workflows/publish-to-gh-with-sphinx.yml
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<li class="file-stats">
<a href="#915e264dc568ca58137c18d53ef0c3ef8c0e53e5">
.github/workflows/publish-to-pypi.yml
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#3f454a98e586d1aa0d322e19afd5e67e08f2d3c8">
CONTRIBUTING.md
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<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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</li>
<li class="file-stats">
<a href="#e4c931cdc9cbef6af4b1a5d7c1cadcdf12143ede">
MACS3/Commands/hmmratac_cmd.py
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<li class="file-stats">
<a href="#f7133f1fe51c383a71695a329a6186c63d203e75">
MACS3/Signal/HMMR_HMM.pyx
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</li>
<li class="file-stats">
<a href="#9b5399347e9c5e79e8491ebcbb254bf072d0155e">
MACS3/Signal/Region.pyx
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<a href="#9ad7d290af8b024d8bc3dfaa58f020b8dd6e3d18">
MACS3/Utilities/Constants.py
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#cd089ae45ce870c45e434019e8f1ed4f066cd425">
<span class="deleted-file">
−
_config.yml
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</li>
<li class="file-stats">
<a href="#d1e5f2ed67d4b695ec7949ca07644776c8c8ec11">
conda/macs3/meta.yaml
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#567cf21115023381d2c53dafc02faef40e12480e">
<span class="deleted-file">
−
debian/patches/no_install_depends_cython.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#cdf904ec26f5943dab905474644a403f7e20bf34">
docs/Advanced_Step-by-step_Peak_Calling.md
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<a href="#adf144f57098687d6b958a6143cce31566e93b81">
docs/INSTALL.md
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docs/Makefile
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docs/bdgdiff.md
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<a href="#efcb7bea9621a6d1e87509e130f945edf14fa3e8">
docs/callvar.md
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docs/make.bat
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<a href="#1eedee0de3098e11956d70af74eac120507f14c2">
docs/pileup.md
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<a href="#cbde063501c5224a323fcb398cbb1ab4fe9b90c5">
docs/qa.md
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
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—
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<a href="https://salsa.debian.org/med-team/macs/-/compare/1d1c7cedc0d230f721e8752f797822f328f26b32...4b0afdebec23eef182dd363ff8023e10a84a716b">View it on GitLab</a>.
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