<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/macs">Debian Med / macs</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/macs/-/commit/cb1a4de288e480aa391889e006bcca891d4d4869">cb1a4de2</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-02-23T14:26:29+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.0.1</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#db0bcfaeb467ef23b0695e02e63dcf5710b98ae1">
.github/workflows/build-and-test-MACS3-macos12.yml
→
.github/workflows/build-and-test-MACS3-macos.yml
</a>
</li>
<li class="file-stats">
<a href="#f8c65bdf3ca49106885041821a56af9bfe51f8f5">
<span class="new-file">
+
.github/workflows/build-and-test-MACS3-non-x64-others.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#5fca4a277c7fe3039bd98932d6f4047be18d5b4b">
.github/workflows/build-and-test-MACS3-non-x64.yml
</a>
</li>
<li class="file-stats">
<a href="#bd744d958559d3587bbb8603ab66f7c041535ff6">
<span class="new-file">
+
.github/workflows/build-and-test-MACS3-website.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#117c01e3f0933c3b1e39f3ed43e4b2a5922e4e7c">
.github/workflows/build-and-test-MACS3-x64.yml
</a>
</li>
<li class="file-stats">
<a href="#06b0adb5510f0ca7d67f9e78c7c0a734ab166d4f">
.github/workflows/publish-to-anaconda.yml
</a>
</li>
<li class="file-stats">
<a href="#65058c6b7d637fe4c9f4b6f029094be0baee913e">
<span class="new-file">
+
.github/workflows/publish-to-gh-with-sphinx.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#915e264dc568ca58137c18d53ef0c3ef8c0e53e5">
.github/workflows/publish-to-pypi.yml
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#3f454a98e586d1aa0d322e19afd5e67e08f2d3c8">
CONTRIBUTING.md
</a>
</li>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#e4c931cdc9cbef6af4b1a5d7c1cadcdf12143ede">
MACS3/Commands/hmmratac_cmd.py
</a>
</li>
<li class="file-stats">
<a href="#f7133f1fe51c383a71695a329a6186c63d203e75">
MACS3/Signal/HMMR_HMM.pyx
</a>
</li>
<li class="file-stats">
<a href="#9b5399347e9c5e79e8491ebcbb254bf072d0155e">
MACS3/Signal/Region.pyx
</a>
</li>
<li class="file-stats">
<a href="#9ad7d290af8b024d8bc3dfaa58f020b8dd6e3d18">
MACS3/Utilities/Constants.py
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#cd089ae45ce870c45e434019e8f1ed4f066cd425">
<span class="deleted-file">
−
_config.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#d1e5f2ed67d4b695ec7949ca07644776c8c8ec11">
conda/macs3/meta.yaml
</a>
</li>
<li class="file-stats">
<a href="#cdf904ec26f5943dab905474644a403f7e20bf34">
docs/Advanced_Step-by-step_Peak_Calling.md
</a>
</li>
<li class="file-stats">
<a href="#adf144f57098687d6b958a6143cce31566e93b81">
docs/INSTALL.md
</a>
</li>
<li class="file-stats">
<a href="#3f4c1daa84110ac0a1cf43167520d6d8737bc806">
<span class="new-file">
+
docs/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#50b405294cab6e87d9db080c24308a8a260df59a">
docs/bdgdiff.md
</a>
</li>
<li class="file-stats">
<a href="#efcb7bea9621a6d1e87509e130f945edf14fa3e8">
docs/callvar.md
</a>
</li>
<li class="file-stats">
<a href="#00814810e146e14f9ec7677b6614e671a4df84bb">
<span class="new-file">
+
docs/make.bat
</span>
</a>
</li>
<li class="file-stats">
<a href="#1eedee0de3098e11956d70af74eac120507f14c2">
docs/pileup.md
</a>
</li>
<li class="file-stats">
<a href="#cbde063501c5224a323fcb398cbb1ab4fe9b90c5">
docs/qa.md
</a>
</li>
<li class="file-stats">
<a href="#272cb361619c0949df8c0ae2ef1ee9d45ed91c63">
<span class="new-file">
+
docs/source/CODE_OF_CONDUCT.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#f10d8309fbae2b7fef4d5df8435185042a41d63a">
<span class="new-file">
+
docs/source/CONTRIBUTING.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#aded7756cdea7c289134466a0d54da4f26d43abb">
<span class="new-file">
+
docs/source/conf.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#be09571cfa6c081944cc9c133ec800f186c7f490">
<span class="new-file">
+
docs/source/docs/Advanced_Step-by-step_Peak_Calling.md
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/macs/-/commit/cb1a4de288e480aa391889e006bcca891d4d4869">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/macs/-/commit/cb1a4de288e480aa391889e006bcca891d4d4869"}}</script>
</p>
</div>
</body>
</html>