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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
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Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/5df86c7d789d5c89379aa2b9fbbfcde129d261f6">5df86c7d</a></strong>
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<span> by Andreas Tille </span> <i> at 2024-03-08T08:46:43+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.17.3+dfsg</pre>
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30 changed files:
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#e2b3b7ad7925dd429929038ac625df473e8789fc">
scripts/igv.command
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<a href="#a21cd47f471d78574815c875103673c2e0775094">
scripts/igv.sh
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<li class="file-stats">
<a href="#7774537df99c19ef32ccd2c7d67db7649a073f1e">
src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java
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<li class="file-stats">
<a href="#9979bc7a30c7e8fe97dde5873eb19cf49e4f5027">
src/main/java/org/broad/igv/feature/genome/CytobandMap.java
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<li class="file-stats">
<a href="#92d3163a76c2408439d44e59241f7af859fd1caa">
src/main/java/org/broad/igv/feature/genome/CytobandSource.java
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<li class="file-stats">
<a href="#e96752e916bb1a8a71d009dc2c81438498e52cca">
src/main/java/org/broad/igv/feature/genome/CytobandSourceBB.java
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<li class="file-stats">
<a href="#58e1ad1b32e35ec2f06bf31081f346e64ec97840">
src/main/java/org/broad/igv/feature/genome/Genome.java
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<a href="#d3562f010ee94d3bb81ac59b22d0df49bc47499f">
src/main/java/org/broad/igv/prefs/PreferencesManager.java
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<li class="file-stats">
<a href="#b0896baad429a066d468d927c8112363a831df88">
src/main/java/org/broad/igv/sam/AlignmentRenderer.java
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<a href="#b7190d591220f635d2bd376cf2a467a7405a33d0">
src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java
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<li class="file-stats">
<a href="#7bb2e412ad0c95ac96d16788b123c1bbe5c362db">
src/main/java/org/broad/igv/sam/SAMAlignment.java
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<li class="file-stats">
<a href="#e5184b30b5cae04f91abde77a17adec5b3b3d0c3">
src/main/java/org/broad/igv/sam/SupplementaryAlignment.java
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<li class="file-stats">
<a href="#215e9a01db57ef8bd11d5db43b51964a68db2879">
src/main/java/org/broad/igv/sam/mods/BaseModificationUtils.java
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<li class="file-stats">
<a href="#e0cfe721248aec025083ee1f43a807426443aa55">
src/main/java/org/broad/igv/sashimi/SashimiContentPane.java
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<a href="#78514fbf6448d86010b5ad73078d5a2d57e9f623">
src/main/java/org/broad/igv/sashimi/SashimiPlot.java
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<a href="#9ec9988938530ddf7a1fa22ad0674388e455fdf6">
src/main/java/org/broad/igv/track/TrackLoader.java
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<a href="#8852495bd15b84de74712481723fb7311a4bcc6e">
src/main/java/org/broad/igv/ucsc/bb/BBDataSource.java
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<li class="file-stats">
<a href="#a9a29bcc0801073f32faddedc3f278fe305f9e38">
src/main/java/org/broad/igv/ucsc/bb/BBFeatureSource.java
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<li class="file-stats">
<a href="#5e9eefe15c3ae8d43f4c71007366ee422daa272b">
src/main/java/org/broad/igv/ucsc/bb/BBFile.java
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<a href="#bcbf36b45fdc55f0e2816c152a55caeeef4ed453">
src/main/java/org/broad/igv/ui/IGVMenuBar.java
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<li class="file-stats">
<a href="#c669a13af88b30b363061d40b4bc3a9ab3b73524">
src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java
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<li class="file-stats">
<a href="#801533f5d4d2bb2ea0b3115e8fd2bef57de5f76a">
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src/main/java/org/broad/igv/ui/action/UCSCGenArkAction.java
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<a href="#bd859e98b09ad7b4574c85a0f78af69216c83248">
src/main/java/org/broad/igv/ui/commandbar/ChromosomeComboBox.java
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<li class="file-stats">
<a href="#f820413b744a24a566a4597d179ca6c4b49e89c2">
src/main/java/org/broad/igv/ui/commandbar/IGVCommandBar.java
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<li class="file-stats">
<a href="#42f287f4e04952efd70cb5ea12e1302ae3ac7a09">
src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java
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<a href="#cbbf174f5ef342d82b4efa6a5fc29e5e270ed0ef">
<span class="new-file">
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src/main/java/org/broad/igv/ui/table/SearchableTableDialog.java
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<a href="#08fdc37e353f190f475caafbb9cb87c3875d21e6">
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src/main/java/org/broad/igv/ui/table/SearchableTableModel.java
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<a href="#1b2a4c9d4499fe92728d21dd425c6b5b28116c89">
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src/main/java/org/broad/igv/ui/table/SearchableTableRecord.java
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<a href="#c6f711534b9c2e95c5f9a1455d6f63d7f7597b0f">
src/main/java/org/broad/igv/ui/util/SnapshotUtilities.java
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
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