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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/9ef090ca2a2dd3cd26e37377b7f85f58f6ef2476">9ef090ca</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-03-08T08:46:41+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/5df86c7d789d5c89379aa2b9fbbfcde129d261f6">5df86c7d</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-03-08T08:46:43+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.17.3+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/d2b4336c11da7a93fe70e6e3fb251630e9746980">d2b4336c</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-03-08T08:47:12+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.17.3+dfsg'
Update to upstream version '2.17.3+dfsg'
with Debian dir 434aa73bc01caacb09c9d497cb8bc3ccab69373d</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/578966103e9e1035b23d822295cb21e82740936b">57896610</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-03-08T08:52:13+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/dc9e4d0780394d21130dab781b283f0f785f5a50">dc9e4d07</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-03-08T08:56:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fix download file name
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/53d08239a9626edbf3c5988496f0210b7c7fac86">53d08239</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-03-08T17:29:31+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fixing double @Ignore annotations in the tests
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/1e66afe662008bc3e4e946292d7647e90c8d9a83">1e66afe6</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-03-08T18:54:59+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Merge branch '2.17.3'
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/igv/-/commit/27e1c8c6a1616977006883426aacc730352d127e">27e1c8c6</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-03-08T18:59:10+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#c0caa7ba42838b53ff0918c9edff2ea0c0000b18">
debian/patches/omit_aws_stuff.patch
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<li class="file-stats">
<a href="#158c9a83bf6361eb3dab802707c2ce0bb9662494">
debian/patches/skip_tests_network.patch
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<li class="file-stats">
<a href="#be3a13aeb161c9f255cec474018169e8cab1f5b0">
debian/patches/using_home_made_icons.patch
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<li class="file-stats">
<a href="#e2b3b7ad7925dd429929038ac625df473e8789fc">
scripts/igv.command
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<li class="file-stats">
<a href="#a21cd47f471d78574815c875103673c2e0775094">
scripts/igv.sh
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<li class="file-stats">
<a href="#7774537df99c19ef32ccd2c7d67db7649a073f1e">
src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java
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<li class="file-stats">
<a href="#9979bc7a30c7e8fe97dde5873eb19cf49e4f5027">
src/main/java/org/broad/igv/feature/genome/CytobandMap.java
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</li>
<li class="file-stats">
<a href="#92d3163a76c2408439d44e59241f7af859fd1caa">
src/main/java/org/broad/igv/feature/genome/CytobandSource.java
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<li class="file-stats">
<a href="#e96752e916bb1a8a71d009dc2c81438498e52cca">
src/main/java/org/broad/igv/feature/genome/CytobandSourceBB.java
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<li class="file-stats">
<a href="#58e1ad1b32e35ec2f06bf31081f346e64ec97840">
src/main/java/org/broad/igv/feature/genome/Genome.java
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<li class="file-stats">
<a href="#d3562f010ee94d3bb81ac59b22d0df49bc47499f">
src/main/java/org/broad/igv/prefs/PreferencesManager.java
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<li class="file-stats">
<a href="#b0896baad429a066d468d927c8112363a831df88">
src/main/java/org/broad/igv/sam/AlignmentRenderer.java
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<li class="file-stats">
<a href="#b7190d591220f635d2bd376cf2a467a7405a33d0">
src/main/java/org/broad/igv/sam/AlignmentTrackMenu.java
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<li class="file-stats">
<a href="#7bb2e412ad0c95ac96d16788b123c1bbe5c362db">
src/main/java/org/broad/igv/sam/SAMAlignment.java
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<li class="file-stats">
<a href="#e5184b30b5cae04f91abde77a17adec5b3b3d0c3">
src/main/java/org/broad/igv/sam/SupplementaryAlignment.java
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<li class="file-stats">
<a href="#215e9a01db57ef8bd11d5db43b51964a68db2879">
src/main/java/org/broad/igv/sam/mods/BaseModificationUtils.java
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<li class="file-stats">
<a href="#e0cfe721248aec025083ee1f43a807426443aa55">
src/main/java/org/broad/igv/sashimi/SashimiContentPane.java
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<li class="file-stats">
<a href="#78514fbf6448d86010b5ad73078d5a2d57e9f623">
src/main/java/org/broad/igv/sashimi/SashimiPlot.java
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<li class="file-stats">
<a href="#9ec9988938530ddf7a1fa22ad0674388e455fdf6">
src/main/java/org/broad/igv/track/TrackLoader.java
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<a href="#8852495bd15b84de74712481723fb7311a4bcc6e">
src/main/java/org/broad/igv/ucsc/bb/BBDataSource.java
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<li class="file-stats">
<a href="#a9a29bcc0801073f32faddedc3f278fe305f9e38">
src/main/java/org/broad/igv/ucsc/bb/BBFeatureSource.java
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<li class="file-stats">
<a href="#5e9eefe15c3ae8d43f4c71007366ee422daa272b">
src/main/java/org/broad/igv/ucsc/bb/BBFile.java
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<li class="file-stats">
<a href="#bcbf36b45fdc55f0e2816c152a55caeeef4ed453">
src/main/java/org/broad/igv/ui/IGVMenuBar.java
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<li class="file-stats">
<a href="#c669a13af88b30b363061d40b4bc3a9ab3b73524">
src/main/java/org/broad/igv/ui/action/LoadFromURLMenuAction.java
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<li class="file-stats">
<a href="#801533f5d4d2bb2ea0b3115e8fd2bef57de5f76a">
<span class="new-file">
+
src/main/java/org/broad/igv/ui/action/UCSCGenArkAction.java
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<li class="file-stats">
<a href="#bd859e98b09ad7b4574c85a0f78af69216c83248">
src/main/java/org/broad/igv/ui/commandbar/ChromosomeComboBox.java
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<li class="file-stats">
<a href="#f820413b744a24a566a4597d179ca6c4b49e89c2">
src/main/java/org/broad/igv/ui/commandbar/IGVCommandBar.java
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<li class="file-stats">
<a href="#42f287f4e04952efd70cb5ea12e1302ae3ac7a09">
src/main/java/org/broad/igv/ui/panel/ReferenceFrame.java
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
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</div>
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