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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/spoa">Debian Med / spoa</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/eb6042bb50fe0f56b86455d2cc4decc0038186d8">eb6042bb</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:23:30+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/ccf4f10523a198e6f5a341e4050d59b45d6738d7">ccf4f105</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:23:32+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 4.1.4</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/771605f36e0c56e2ce39ecff67d4dd100633a6b7">771605f3</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:23:32+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/4.1.4'
Update to upstream version '4.1.4'
with Debian dir d5178e73097ce74a9f1693a353ab62b81ab4eb56</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/70671294f9af68cb27e72fe716704c7995124f77">70671294</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:23:32+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/d99344ed275e1e25e86752921a00d3bb10725fe9">d99344ed</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:33:05+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/6990b2df277a7646fe1dc22807e7cd02524a93da">6990b2df</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:39:35+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: set optimize=-lto. Closes: #1015667
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/eca3d170adb2e2ce15ab933f79ee4dca1c8b9914">eca3d170</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:55:37+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/libspoa7.0.0.symbols.amd64: add new symbols.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/e2921dcc09fd8569eea771c1e656623bd91e4b6e">e2921dcc</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:55:37+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/source/lintian-overrides: removed, no longer needed.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/spoa/-/commit/8fe159c574e33a4f3eb574d1c1ba23d64a6d0117">8fe159c5</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-21T12:55:37+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#3110122e043c26dcb0ba84c1ecf2df9f4afbf023">
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.github/workflows/spoa.yml
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<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
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.travis.yml
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#d276ec0708dee05796083d200c9c7a89293b9741">
debian/libspoa7.0.0.symbols.amd64
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<li class="file-stats">
<a href="#295815bc81b7664bf5f47a7f64db6af47ad53941">
debian/patches/shared_and_static.patch
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<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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debian/source/lintian-overrides
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include/meson.build
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<a href="#fc34f7802c8e4e1d8f77ea7adcee918dd50c2131">
include/spoa/graph.hpp
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<li class="file-stats">
<a href="#f548c08d242b80ae479c898855c571fa433b2de2">
include/spoa/spoa.hpp
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include/spoa/version.hpp
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meson_options.txt
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<a href="#a541bd855330270bc14a853cb8d58d4d06fd2cd7">
include/spoa/architectures.hpp
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src/architectures.hpp
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<a href="#5b11ed83019dc2479735a42da7b6c9eeb7155c33">
src/graph.cpp
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src/main.cpp
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src/simd_alignment_engine.hpp
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src/simd_alignment_engine_dispatcher.cpp
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src/simd_alignment_engine_implementation.hpp
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The diff was not included because it is too large.
</h5>
</div>
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