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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/kallisto">Debian Med / kallisto</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kallisto/-/commit/5c69de56085ebbcfd3fcace0325cf592d2099abe">5c69de56</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-27T11:40:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upstream has forked bifrost, use their copy instead.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kallisto/-/commit/f1dc2a4a0aa68efa1e4010ef5aadb9053acd741d">f1dc2a4a</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-27T11:42:14+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.50.1+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kallisto/-/commit/04e967ee8174cb989a994e097a679260938c1f84">04e967ee</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-27T11:42:18+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/0.50.1+dfsg'
Update to upstream version '0.50.1+dfsg'
with Debian dir e1c4768a2595b84f0df81fcd64bf8e4180f0864b</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kallisto/-/commit/b15d94a157791022926b8cf3c86c8a09e25e7bb6">b15d94a1</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-27T11:44:19+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>exclude generate HTML docs of bifrost
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kallisto/-/commit/ad903f064c3535dbd41d7f2aa1beb136d80ca2b5">ad903f06</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-27T11:44:56+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.50.1+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kallisto/-/commit/37dc5ba6a2ae346625f8bd3e4e2c17a3607e0b86">37dc5ba6</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-27T11:45:00+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/0.50.1+dfsg'
Update to upstream version '0.50.1+dfsg'
with Debian dir 893437f9425ba2b444ea04ad15920378d2d03720</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kallisto/-/commit/148552cc96c32465412692022f64bcb03e740537">148552cc</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-27T12:05:10+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>bifrost patch adjustments
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kallisto/-/commit/7d125706ac5f607a89e1b3fa6533f9c93b0a0919">7d125706</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-03-27T12:10:13+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: need cmake option needed: USE_BAM.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
16 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#2b96346e015f870ae988a5783c6e77e89d22871a">
debian/patches/htslib1.3
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#4ce3d06f18bafda3c884cb60d10bafd751984963">
debian/patches/use_debian_packaged_bifrost.patch
</a>
</li>
<li class="file-stats">
<a href="#e9ffd79035f20df75689c726e3780374ee2ad4f4">
debian/patches/use_debian_packaged_htslib.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#7cd8bd078dfe5bff60803f777c125832259ef13d">
<span class="new-file">
+
ext/bifrost/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#211030f896e776f4f264b6e7ef0605db60215284">
<span class="new-file">
+
ext/bifrost/.gitmodules
</span>
</a>
</li>
<li class="file-stats">
<a href="#22561252239b449fed426d578e8c58be43a5c219">
<span class="new-file">
+
ext/bifrost/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#1e57b2f31083c85da170a6229b7fa14dbb811b6e">
<span class="new-file">
+
ext/bifrost/Changelog.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b0060ddd263467754f15c850ca9de4fa0d1768a">
<span class="new-file">
+
ext/bifrost/Doxyfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#ffe975960ad0d37dd003c7cf9642066f34d0d01d">
<span class="new-file">
+
ext/bifrost/LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#7ad99437a47142618f66a409628042bb0b588fe0">
<span class="new-file">
+
ext/bifrost/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#d15fae1e72e8c0323b66ff24220bee6a3bc5b4cf">
<span class="new-file">
+
ext/bifrost/doc/doxygen/doxygen_sqlite3.db
</span>
</a>
</li>
<li class="file-stats">
<a href="#04895fe97a757174d309393b3e593fd4e892f85e">
<span class="new-file">
+
ext/bifrost/doc/doxygen/latex/ColorSet_8hpp.tex
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
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