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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/kalign">Debian Med / kalign</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kalign/-/commit/3a3c9ce2ffe05910306246175700dc2fef0f2540">3a3c9ce2</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2024-04-02T13:25:04+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kalign/-/commit/0da8b281784f1941e370f8f80109a70bfeb6800f">0da8b281</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2024-04-02T13:25:05+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.4.0</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kalign/-/commit/8df816345c0ab659217dd4d8f67483583947f748">8df81634</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2024-04-02T13:25:07+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/3.4.0'
Update to upstream version '3.4.0'
with Debian dir 1a93845bf26cb2b3e7976e7fc978e33059d0df8d</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kalign/-/commit/a525276887381ce861b19d3723b6e799623e823e">a5252768</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2024-04-02T13:48:32+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: disable pass-proper-flags.patch for now.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kalign/-/commit/14b0bf1d2c7e2879de2db844dabdb7aa1f13be5e">14b0bf1d</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-04-02T13:49:01+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix epoch
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/kalign/-/commit/8b8bb89b976a9c7011570a1149fce3b6f22aef86">8b8bb89b</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-04-02T13:49:50+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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.gitignore
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CMakeLists.txt
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<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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debian/changelog
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debian/patches/series
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lib/CMakeLists.txt
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lib/src/aln_controller.c
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lib/src/bisectingKmeans.h
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lib/src/msa_alloc.h
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lib/src/msa_check.c
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lib/src/msa_io.c
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lib/src/sequence_distance.c
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The diff was not included because it is too large.
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—
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