<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: 0.875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,0.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/drop-seq">Debian Med / drop-seq</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/51fcf2abe8b0206c5f07eb12664a41c0752a9da2">51fcf2ab</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-19T22:46:04+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.0.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/2a349eb1db666b8c3a3da0786950b0c69a6d634c">2a349eb1</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-19T22:46:45+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/3.0.0+dfsg'
Update to upstream version '3.0.0+dfsg'
with Debian dir 01a1421794ef129ffe65f63ed179809d0af6dfff</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/71048b3f9ab5ad91c37db1d83dce3b759191a563">71048b3f</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-19T22:56:27+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/09ea142a485cbb1ff0629f8114b989e0a72c0577">09ea142a</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-19T22:56:41+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Raising Standards version to 4.7.0 (no change)
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/a560df184a53dcf99dbbea1e761545ce68ed5565">a560df18</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-19T22:58:06+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Bumping years in d/copyright
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/4c71163e97079c23482af2a780646bffaea867b2">4c71163e</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-19T22:58:28+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/023ea06b05a8086a8b97c6aee1cabf7f4c61527e">023ea06b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-23T13:46:25+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Putting classes of src/testFixtures in src/tests for the build
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/81998c183c61821cdf4c35b5536f46bbc956e051">81998c18</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-23T13:47:14+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Patching out invocation of unpackaged google.api.gax classes
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/188febb8422a4a8f8ee02f89356728b0d90f8ba2">188febb8</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-23T13:47:52+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Avoiding the use of recent OpenJDK-21 methods
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/f1c40bd1ac02c0e43ead5fb6e5e01a1ec7406734">f1c40bd1</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-23T13:48:18+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Putting defs.sh out of /usr/bin
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/639dec7c828bbfa4bfdb2ca6b77a91156606592e">639dec7c</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-23T13:48:43+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating autopkgtests after changes in the software
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/09606d7529aebe52f07a31f54e059d81882b968a">09606d75</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-23T13:49:03+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/drop-seq/-/commit/551ad6d9b69a3deb3f182479d6c48d0325595b45">551ad6d9</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-04-23T13:49:50+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#fa3c4511b712375e46ccf910634c0c155877d888">
debian/drop-seq-tools.install
</a>
</li>
<li class="file-stats">
<a href="#a2a0f2265fe4fea07d13f31356bde869bdcd56fd">
debian/patches/link_excluded_file.patch
</a>
</li>
<li class="file-stats">
<a href="#ce93b0109c2cb9d91617ef75f93eb4ebe17a6301">
<span class="new-file">
+
debian/patches/no_google_api_gax.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#e1981ba76cdf45cf038512bc7b6853a0a54d5007">
<span class="new-file">
+
debian/patches/openjdk_21_syntax.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4592439063fda75ebb65ac4b6d0f48b1af2cdcbf">
debian/patches/paths_in_scripts.patch
</a>
</li>
<li class="file-stats">
<a href="#e6b2b610a62d952a2e59514b812e2e911ceb2675">
<span class="new-file">
+
debian/patches/put_defs_sh_out_of_path.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#31d0ebf173b4f9927c3afeb2de3c47024bf13f34">
<span class="new-file">
+
dropseq/build.gradle.kts
</span>
</a>
</li>
<li class="file-stats">
<a href="#ec27dae6e852c099bfcae8de5204d286bb6f04ff">
<span class="new-file">
+
gradle/wrapper/gradle-wrapper.jar
</span>
</a>
</li>
<li class="file-stats">
<a href="#fbe448ebfc3eb2d4e308f6b8b043666f5b57235e">
<span class="new-file">
+
gradle/wrapper/gradle-wrapper.properties
</span>
</a>
</li>
<li class="file-stats">
<a href="#5bbfa66edb4db3c7c33c5181f43510990d3307f9">
<span class="new-file">
+
gradlew
</span>
</a>
</li>
<li class="file-stats">
<a href="#2a45a911a8f1836b0b6c5b758962572012d8f8c3">
<span class="new-file">
+
gradlew.bat
</span>
</a>
</li>
<li class="file-stats">
<a href="#126e844ff98b3c8e9ce07e5602abeea640905d7e">
<span class="deleted-file">
−
public.iml
</span>
</a>
</li>
<li class="file-stats">
<a href="#749edfcc96398253e5b3416184e95c46621da850">
<span class="new-file">
+
settings.gradle.kts
</span>
</a>
</li>
<li class="file-stats">
<a href="#e222ff2fb1f21a23658cc7f93c851e0bd1362936">
<span class="new-file">
+
src/R/packages/DropSeq.dropulation/.Rbuildignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#8e9221aabc1ae60d5762110adcd5fdc0677a9334">
<span class="new-file">
+
src/R/packages/DropSeq.dropulation/DESCRIPTION
</span>
</a>
</li>
<li class="file-stats">
<a href="#48a4d68f799a8cf0edc644796bc85db6694f9b23">
<span class="new-file">
+
src/R/packages/DropSeq.dropulation/DropSeq.dropulation.Rproj
</span>
</a>
</li>
<li class="file-stats">
<a href="#b3642285f81de531a492547d6e0246d69fa465b4">
<span class="new-file">
+
src/R/packages/DropSeq.dropulation/LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#39d422897e52d44ac7e7895cf664ee09c09a314b">
<span class="new-file">
+
src/R/packages/DropSeq.dropulation/LICENSE.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#2422cd9a00089f97234a4e3fd674a0fc6b491071">
<span class="new-file">
+
src/R/packages/DropSeq.dropulation/NAMESPACE
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d77f4bf999f2e0201525efdfa856abf33131874">
<span class="new-file">
+
src/R/packages/DropSeq.dropulation/R/DonorAssignmentStandardAnalysis.R
</span>
</a>
</li>
<li class="file-stats">
<a href="#1379a322657fe6946a4800e42ab9c9cca68fbfde">
<span class="new-file">
+
src/R/packages/DropSeq.dropulation/R/DropSeq.dropulation-package.R
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/drop-seq/-/compare/0fe09beff8b9249df11b37b45189a0229aa99048...551ad6d9b69a3deb3f182479d6c48d0325595b45">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
</p>
</div>
</body>
</html>