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<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/libvcflib">Debian Med / libvcflib</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/853b3b0a5a3a3aaffbe20cf5832b70ffad991829">853b3b0a</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-04-27T09:57:08+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.0.10+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/c84f232d326bc583b040a871bfa482a24b0ff9f4">c84f232d</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-04-27T09:57:24+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.0.10+dfsg'

Update to upstream version '1.0.10+dfsg'
with Debian dir 46760033f209608e6e171e00158f8814209ed9b7</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/b0f999495ba19fb6fe5b7e0ee2452b635d554540">b0f99949</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-04-28T15:41:24+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>update changelog
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/a52f24734b8a91a4ebce3d75897d6cc971ad7f52">a52f2473</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T11:52:12+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/watch: fix capture of pre-releases.

Somehow, the scraping of Github tags page tended to meddle with the
version capture, so this change introduces a switch to git mode, in
addition to modifications to version mangling.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/c9a8fd0c7ff1740f8cacdf059745709aaadceb11">c9a8fd0c</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T11:55:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>update changelog.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/c62d166498fbae171c2e6b476ede1e9e638fa7bc">c62d1664</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T11:56:11+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.0.11~pre2+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/6b929119328704a8f3a951b26e2095529235e94e">6b929119</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T11:56:26+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.0.11_pre2+dfsg'

Update to upstream version '1.0.11~pre2+dfsg'
with Debian dir 22bde284108880cc626fc27428eaf75ea361923a</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/16774a3da1dfe83be9441c2d90b7b1b07aec6d9f">16774a3d</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T14:14:01+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>no_fsom patch: unfuzz.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/292390715a124eb5a0398d5bfef3c2090b6d0849">29239071</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T14:14:27+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>shared_lib.patch: unfuzz.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/faabd68469df06548a409a3ed4e3eab80135b8bf">faabd684</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T14:14:47+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>tabix_linking.patch: unfuzz.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/eeb9208664cad8847f2135e6f8c1ca55543289c0">eeb92086</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T14:15:24+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>use_debian_packaged_fastahack.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/7bd6e34cbab0b3c3a6f9e2751e3e5646c106d345">7bd6e34c</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T14:15:48+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>use_debian_packaged_libssw.patch: refresh.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/ba24bdaefcbbca5991c7311cb91e101548286145">ba24bdae</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T14:16:16+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>use_debian_packaged_smithwaterman.patch: unfuzz.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/4bd8eea2eccfcb19451c8b07c96bbfc111f5a61c">4bd8eea2</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T14:16:50+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>wfa2_linking: unfuzz.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/161e116fa87debe0f8ad2c7bf5d7da2f1950f85d">161e116f</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T15:04:41+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>cmakelists-fixups.patch: new: fix a couple of configure issues.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/75c791dae43d48a3840c7ceeb5845286a0d3b3a8">75c791da</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T15:05:44+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/libvcflib-tools.install: remove now missing vcfallelicprimitives.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/d3d48eceae6d860ca566a8b9557ba6468c33d644">d3d48ece</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T15:06:58+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/libvcflib-dev.install: adjust to new target directory.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/libvcflib/-/commit/60790d862910ecea5323bd3c7d6e4410a1143a43">60790d86</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-04T15:09:02+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>update changelog.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#69f0b4e823a65254e03abae9b204d501ac490ca4">
.github/workflows/ci_test.yml
</a>
</li>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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RELEASE_NOTES.md
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<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#aff123687d9d4245b611aac917522400d6720d6e">
debian/libvcflib-dev.install
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<li class="file-stats">
<a href="#57d9ff69ed8009018744730cac30075db295a453">
debian/libvcflib-tools.install
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<li class="file-stats">
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<span class="new-file">
+
debian/patches/cmakelists-fixups.patch
</span>
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debian/patches/no_fsom
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debian/patches/series
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debian/patches/shared_lib.patch
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debian/patches/tabix_linking
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debian/patches/use_debian_packaged_fastahack.patch
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debian/patches/use_debian_packaged_libssw.patch
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debian/patches/use_debian_packaged_smithwaterman.patch
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debian/patches/wfa2_linking
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debian/watch
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doc/abba-baba.md
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doc/bFst.md
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doc/dumpContigsFromHeader.md
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doc/genotypeSummary.md
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doc/hapLrt.md
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doc/iHS.md
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doc/pVst.md
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doc/permuteGPAT++.md
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
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