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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/2967577397961d4767c7c9b762d4555133ef94e4">29675773</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-08T18:16:39+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.5.61+dfsg</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/7d0522bb121c4efae1bdc2b6bd20482693aad6ff">7d0522bb</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-08T18:16:46+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.5.61+dfsg'
Update to upstream version '2.5.61+dfsg'
with Debian dir f2757e47930a3b872cf135de7f24338c34f0bfe5</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/27303cbbf31672b5e870f0c14e2f160636756e87">27303cbb</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-08T18:18:43+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: declare compliance to standards version 4.7.0.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/8a241c96d375b34af1c5fb81c11126a2a8bc4d6f">8a241c96</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-08T18:19:39+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Unfuzz all patches.
</pre>
</li>
<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/hyphy/-/commit/2b5188c6e7af2a76283aaef586aca276c2d20e1d">2b5188c6</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-08T18:47:44+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>update changelog with a note about autopkgtests failure.
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#63c3307a25f0c1334b59e145f9fc809c05bbfa70">
debian/patches/rm_arch_specific_flags.patch
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<a href="#fae4045e7c53be7e233f4d504a872eab7bffa150">
debian/patches/set-zlib-after-setting-default-libs.patch
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<a href="#d185b62d54557160e7ddc743405a9cec66dcaa96">
debian/patches/use_debian_sqlite.patch
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<a href="#9a44af93e64b38128be8393bf631d25a3a7c1204">
res/TemplateBatchFiles/MSS-joint-fitter.bf
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<a href="#4ed0809c2483f5150cdfd2c3bf07d212387406d0">
res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
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<a href="#817efc81f1180519a6136b50a447433f20cf679d">
res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
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<a href="#cf5243a3058ebeab74574f8cd2c771cd63a43208">
res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
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<a href="#c079be28c5231888d711d5c41d1be180223dfce6">
res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
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<a href="#46f64a429308a24b6796d95746f6664f169a135e">
res/TemplateBatchFiles/SeqAlignmentCodonShared.ibf
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<a href="#5dfec713e3892a936e8b5a63db56c03bee3ec252">
res/TemplateBatchFiles/libv3/all-terms.bf
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<a href="#95a7c74b0e59bc9dc8d85b6ac4b02d308b4e09fb">
res/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
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res/TemplateBatchFiles/libv3/models/codon/MSS.bf
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<a href="#0ad5f4d1790906a0091532d9ca355a6162bf3c31">
res/TemplateBatchFiles/libv3/models/model_functions.bf
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<a href="#801d4bca405dfccac3b1e451b211ca98bd00d599">
res/TemplateBatchFiles/libv3/models/parameters.bf
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<a href="#e7b72a8f9f424fe1e9e9e76f25522816189c14c9">
res/TemplateBatchFiles/libv3/tasks/alignments.bf
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<a href="#c7933e171033f4eac9d83419583cca5474f9266c">
res/TemplateBatchFiles/libv3/tasks/estimators.bf
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<a href="#59143a488074496190f2ad006f55039a2ac018cd">
res/TemplateBatchFiles/libv3/tasks/mpi.bf
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<a href="#3945e6db8feb0e4ed58719b69ff3d8485bc45e87">
res/TemplateBatchFiles/libv3/tasks/trees.bf
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<li class="file-stats">
<a href="#5e59fe71518e21f42170943e14bd565a8f5e0144">
src/core/alignment.cpp
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<li class="file-stats">
<a href="#cbedcf5fec686e5f563504b995c5d7d07fd8c6b2">
src/core/batchlanruntime.cpp
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<a href="#d09b45303442d6299978fa8d0c8f3338d6a17886">
src/core/formula.cpp
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<a href="#59d202cc6599be3167fc3bd731039997dcaf9c72">
src/core/fstring.cpp
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<a href="#07aceb8d215a75908cea626d9c80bc2a7c06639c">
src/core/global_things.cpp
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<a href="#d01e581f215a0108a96d0f6d1b081d43c2e0a8a3">
src/core/include/defines.h
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<a href="#40fc4f1e42852e6f2302e213cd9b3646abe98291">
src/core/include/formula.h
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<li class="file-stats">
<a href="#7277ab70f1a79733638d6141d1cb1d3f8b9c26c2">
src/core/include/likefunc.h
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<a href="#0aac57334e127d66d9818be138193215c7262bbe">
src/core/include/matrix.h
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: 0.875rem;">
The diff was not included because it is too large.
</h5>
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<p style="font-size: small; color: #737278;">
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