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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/snpeff">Debian Med / snpeff</a>
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Commits:
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<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snpeff/-/commit/4237078237a3adf6ebc45297563660676d020a86">42370782</a></strong>
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<span> by Pierre Gruet </span> <i> at 2024-05-12T21:14:28+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Import Upstream version 5.2.b+dfsg</pre>
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<li>
<strong style="font-weight: bold;"><a href="https://salsa.debian.org/med-team/snpeff/-/commit/50acaa15c4ab990f51f8e1cc4f31bdf99aebddbf">50acaa15</a></strong>
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<span> by Andreas Tille </span> <i> at 2024-05-12T21:14:30+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Import Debian changes 5.2.b+dfsg-1
snpeff (5.2.b+dfsg-1) unstable; urgency=medium
.
[ Pierre Gruet ]
* New upstream version
* Refreshing patches
* Changing the path to tests in the autopkgtest
* Alleviating d/rules and correcting paths in the patches as build-time
test .java files are now conveniently located under src/test
* Removing now unused Lintian override
.
[ Andreas Tille ]
* Remove trailing whitespace in debian/copyright (routine-update)
* Lintian-override for all source-is-missing issues
* d/watch: fix download name
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30 changed files:
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<a href="#f14cb12fa7462cdba1e6e6e4b499bce722fe22ba">
.vscode/launch.json
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<a href="#754b20a3c5d0b6103ab8c7861e9c5ea1cd6a2bba">
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config/snpEff.ENSEMBL_110.config
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config/snpEff.ENSEMBL_BFMPP_57.config
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config/snpEff.bundles.ENSEMBL_BFMPP_57.config
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<a href="#47cc5ea4264ea2f7621b478691296be7b66d8727">
config/snpEff.config
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<a href="#fcd0f37617c726fe6d62c7d0b6e3377c49bfb17b">
config/snpEff.dbs.config
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<a href="#bc1ffc985b11a76064e2e2ddc95dffbcf506c259">
config/snpEff.test.config
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#94bfc9b7b2edebd4dc49a7edd537fcb53d71efa6">
debian/patches/update_launching_script_and_config_file_for_Debian.patch
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<a href="#85ccdeeb03055211183e48520592d9a93592b330">
debian/source/lintian-overrides
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<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<a href="#e28ef2e7e58358e032697e6115729a0e48d0db5b">
docs/download/index.html
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docs/images/coverage_hitogram.png
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<a href="#8c0d6b0dca5817118d2f528acb81b643d000c69a">
docs/index.html
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<a href="#41309f3083d517bd6b273059e71c4c3e25f3e458">
docs/sitemap.xml.gz
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<a href="#751f9e123f617b7b7a3987e1ab5977883c04cd0d">
docs/snpeff/faq/index.html
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docs/snpeff/inputoutput/index.html
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<a href="#11d2cbf824ef3f1c00b518ec699037d21a551f33">
docs/snpeff/outputsummary/index.html
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<a href="#e7eac1063274854e2bd2cbfdf50b75e57d5b72aa">
docs/versions.txt
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<a href="#a39ddb14dc438b3e36c7ef81f9d455bc6dd6febc">
galaxy/tool-data/snpEff_genomes.loc
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<a href="#18435e9731326cca1752f95c6eb594baa7527e67">
galaxy/tool-data/snpEff_genomes.loc.sample
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pcingola_cleanup.xml
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pcingola_formatter.xml
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src/bds/download/downloadEnsemblBulk.bds
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<a href="#afd50b4ce6efc12a52687c80b92cdae4dca5dba9">
src/bds/download/downloadGenome.bds
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<a href="#cb97482d6cd9f0510073ea41925c0a0f3d29e9eb">
src/bds/download/downloadMane.bds
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<a href="#0b81e1dee9f1c0fb58c789602684b9c7428cf290">
src/bds/make.bds
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<a href="#43e111669189d6d34b56634e725e70b69a95a882">
src/docs/download.md
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src/docs/images/coverage_hitogram.png
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<a href="#cedbd16190042478751d4a9c74f32e1bb9adab56">
src/docs/index.md
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The diff was not included because it is too large.
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<p style="font-size: small; color: #737278;">
—
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