<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/5f091245a15bae7ad7d5c7c4a3a2aa05b4bd6ac3">5f091245</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-05-27T08:45:55+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/90bd77d716bbb026019f3bdba3831dd5ad0c05a0">90bd77d7</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-05-27T08:45:56+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 7.0.0</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/9960451bca1719c939a7641db0ce8d423a5b51c0">9960451b</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-05-27T08:46:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/7.0.0'
Update to upstream version '7.0.0'
with Debian dir de7f24cd09dd164c18f0a7969691e407c1bb6cc5</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/fd036ec3fcd12ceaff74c76645bd8ae977dfe212">fd036ec3</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-05-27T09:25:08+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#889c91308449c65c309146f6487ae74af64de5e9">
contrib/admin/mypy-with-ignore.py
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#7ba7e16fece655aac534679ade36127282441e6b">
debian/patches/accept_debian_packaged_docker_version.patch
</a>
</li>
<li class="file-stats">
<a href="#e94fbb8719c4a68a67df894f2683205bb9914852">
debian/patches/no_galaxy_lib
</a>
</li>
<li class="file-stats">
<a href="#bbcb48e2be151813ceeaaec7eadcaf824b49c1c6">
debian/patches/setting_version.patch
</a>
</li>
<li class="file-stats">
<a href="#ee6ceca55dcb70e41409534cdce765fc29138603">
debian/patches/soften-configargparser-deps
</a>
</li>
<li class="file-stats">
<a href="#9016d006f9077fa6a613bd573e3a818a30fa0896">
debian/patches/soften-cwltool-dep.patch
</a>
</li>
<li class="file-stats">
<a href="#c1fb0e9c942747a583cd8adc2707dd0cb1d97505">
debian/patches/soften-mesos-deps
</a>
</li>
<li class="file-stats">
<a href="#734cb112ea615891b9ef15d07ae7bc1dee10abc3">
docker/Dockerfile.py
</a>
</li>
<li class="file-stats">
<a href="#dabb59ade913e6dd71d7ac520a694b34d07e65a7">
docker/extra-debs.tsv
</a>
</li>
<li class="file-stats">
<a href="#3f4c1daa84110ac0a1cf43167520d6d8737bc806">
docs/Makefile
</a>
</li>
<li class="file-stats">
<a href="#7d596e43106b4d6180f6714f5d0d24726c252954">
docs/_static/logo.png
→
docs/_static/logo.jpeg
</a>
</li>
<li class="file-stats">
<a href="#98b0a1e2c9644c87d8bb8f60a479e7b366cc7607">
docs/appendices/architecture.rst
</a>
</li>
<li class="file-stats">
<a href="#cc0a8768388f2d7df1bbd530d018444d0f51bd26">
docs/appendices/toil_architecture.jpg
→
docs/appendices/toil_architecture.png
</a>
</li>
<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
</a>
</li>
<li class="file-stats">
<a href="#abd8589b4d5ee2ea66ee95d8caf4e8759ffb9ce0">
docs/contributing/contributing.rst
</a>
</li>
<li class="file-stats">
<a href="#f3e80c072f3348ec38b62cc9865033bb3e1d9ad3">
docs/cwl/running.rst
</a>
</li>
<li class="file-stats">
<a href="#9c7786e2c4730fab23a42468d049ec242c297b8c">
docs/gettingStarted/install.rst
</a>
</li>
<li class="file-stats">
<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">
docs/running/cliOptions.rst
</a>
</li>
<li class="file-stats">
<a href="#9d336859ebc50ce12f946e32de94343f00be9ebb">
docs/running/cloud/clusterUtils.rst
</a>
</li>
<li class="file-stats">
<a href="#70b5c097c4e102be40b0cbc3b0321bdec8cb6e10">
docs/running/cloud/kubernetes.rst
</a>
</li>
<li class="file-stats">
<a href="#2bc4216ad4aeb71ac42dace0d0de50ccaaca3718">
docs/running/debugging.rst
</a>
</li>
<li class="file-stats">
<a href="#ec012933fbef6e569189da65fb14f912b9d04ce3">
docs/running/utils.rst
</a>
</li>
<li class="file-stats">
<a href="#e2efaa82fc01acd49b7cb7e8a413bcec93543e32">
docs/wdl/developing.rst
</a>
</li>
<li class="file-stats">
<a href="#4219195fd175924103d75814f4df073cba43f3bc">
docs/wdl/running.rst
</a>
</li>
<li class="file-stats">
<a href="#94ef85ac03a9b3926d1726c51aaf7e720200965d">
requirements-aws.txt
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/toil/-/compare/23688c5a12c47b6bdeb68b4c69f7d16c4022fcec...fd036ec3fcd12ceaff74c76645bd8ae977dfe212">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
</p>
</div>
</body>
</html>