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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/samtools">Debian Med / samtools</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/6733c3c29832dbcdf207a6f6e0af995135f45f2e">6733c3c2</a></strong>
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<span> by Étienne Mollier </span> <i> at 2024-05-29T15:03:06+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.20</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/90a096195e92f3e0a5d64508bedae5e792604636">90a09619</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-29T15:03:22+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.20'
Update to upstream version '1.20'
with Debian dir 0c9a8b0c00a6fb58bf78642dea0d042b83beebf6</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/2b57a20334a594f6d69dc7c6f228dc402fc5b6da">2b57a203</a></strong>
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<span> by Étienne Mollier </span> <i> at 2024-05-29T15:04:50+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/copyright: update copyright year.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/4f1b24240c17aef27d989c398828d86fc08adabe">4f1b2424</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-29T15:05:28+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: declare compliance to standards version 4.7.0.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/922ea172be6eccb28bd1749b57e0482e101a2a35">922ea172</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-29T15:13:39+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: fix permissions of a data file in samtools-test.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/5c53e568f6e30a21e5f8f00377c8fd9b7bbb9952">5c53e568</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-05-29T15:14:22+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>ready for upload to unstable.
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
INSTALL
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#8e91c39ea457744ee86e8378b154b7f3bb28e325">
NEWS.md
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<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
README
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<a href="#a8c86a0fd0345dc5d362ba470fff0ab9a0fc7f1b">
amplicon_stats.c
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<li class="file-stats">
<a href="#47e9e5b41a99db7f29a9c389319288b5be3dd44d">
bam2depth.c
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<a href="#a570bc81d25a3e7cca80a8fb33741c4cd427a6e0">
bam_consensus.c
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<a href="#1b031362756348a3fc06a80a67e2440c22c1f4ad">
bam_fastq.c
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<a href="#7e7625df357c73e60fb5763cc5124783c1c76fc6">
bam_import.c
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<a href="#d4bc32e2570b26508c2d81d71d23edbaaec16180">
bam_mate.c
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<li class="file-stats">
<a href="#d89276ce0c6629d6fec9587f4106df30287e3dad">
bam_plbuf.h
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<li class="file-stats">
<a href="#a933ca350aef7d0983a7c7029f2ef5b529f89ea5">
bam_plcmd.c
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<li class="file-stats">
<a href="#4554809383bbbc3e2470c76b4bfd91881ede7125">
bam_sort.c
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<a href="#b80f6d653474c3fd4413bdefffae9a6c73c046af">
bam_split.c
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<li class="file-stats">
<a href="#738362cbccdf6bee48db83872ebc9b8fa81d0564">
bedcov.c
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<li class="file-stats">
<a href="#4d8f0ca62bc8e28a9dad1c22aed2061b2af7c219">
bedidx.c
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<li class="file-stats">
<a href="#ae4043bcca5a1bddf81eaec9e023257d15a2015d">
coverage.c
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#131ea2eda9731473dd1cf610feea1c836c24ccb2">
doc/samtools-addreplacerg.1
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<li class="file-stats">
<a href="#890899d7ef7d59def631cb6b62d724f647d1ea35">
doc/samtools-ampliconclip.1
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<li class="file-stats">
<a href="#e841393fcf15d28d19530298ba64d7d1868506d2">
doc/samtools-ampliconstats.1
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<li class="file-stats">
<a href="#4b8c2f7ba6fa197665c9cf755ac0e7c47ef7db6b">
doc/samtools-bedcov.1
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<li class="file-stats">
<a href="#4c3d326fc8bbbf65887e3e6426ea12174df3531c">
doc/samtools-calmd.1
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<a href="#33e2c5090c4952098ad28f0641247e1e9769750d">
doc/samtools-cat.1
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<a href="#d9f205daf2940bd82b3b37a703ddf89bbb14dd51">
doc/samtools-collate.1
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<a href="#3ab3be1ab74b4148fadb62c3fd12d639ee398b07">
doc/samtools-consensus.1
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<li class="file-stats">
<a href="#264b9241d88d427e876a36aa185da92c181115c3">
doc/samtools-coverage.1
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
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