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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Tomasz Buchert pushed to branch master at <a href="https://salsa.debian.org/med-team/mothur">Debian Med / mothur</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/610156ad98ab8077ae0201c36f35c5c6eefb02a6">610156ad</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2024-06-02T10:15:44+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.48.1</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/0c0c1fda0b5a67540e08d5eb615bcffebfde7131">0c0c1fda</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2024-06-02T10:15:51+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.48.1'
Update to upstream version '1.48.1'
with Debian dir f14bb0a39301fe1f96a8360f85e12b85dd14f6ea</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/01f1324c8120146b88b872a1363125462e30d9bb">01f1324c</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2024-06-02T10:22:09+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>release and refresh patches
</pre>
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</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8b67dc09b93b38e95da2a54036fa1db5b207cc5b">
Mothur.xcodeproj/project.pbxproj
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#29a278f4dc70b0ebc3d910bd830a8fab4258f7a7">
debian/patches/0002-Fix-include.patch
</a>
</li>
<li class="file-stats">
<a href="#f3841ba3c5a09b7187b88bb43b961d4a513195c4">
debian/patches/add-hardening-opts.patch
</a>
</li>
<li class="file-stats">
<a href="#ce8311c42636988878839c9b634efc3ceb190d7e">
debian/patches/c++14.patch
</a>
</li>
<li class="file-stats">
<a href="#cf39ab68d9d81e8ea74886f9556a67f049e65150">
debian/patches/fix_linking.patch
</a>
</li>
<li class="file-stats">
<a href="#82a6e9209860efefb502f8f5c0e3e8ceed4b0242">
source/commands/countseqscommand.cpp
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</li>
<li class="file-stats">
<a href="#07bccde36815d8aaacf85268d46ee8bb7833527b">
source/commands/fastaqinfocommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#2d8ff03f1173b469cc27e3a01066b3ac07d16aad">
source/commands/fastaqinfocommand.h
</a>
</li>
<li class="file-stats">
<a href="#a3c808bbb45b834bfab91f693be79c1184e7d921">
source/commands/getmimarkspackagecommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#6a5503c08e73d8e6acf3aa30e59030c93bbbd9b0">
source/commands/getoturepcommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#f179565b0222d729ba14d4ccb444f9b1c1e38dc2">
source/commands/makecontigscommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#69e32ad0eb8b91cbda55255312c2f8d251c6f5be">
source/commands/makecontigscommand.h
</a>
</li>
<li class="file-stats">
<a href="#a1863f4da129001dfbbb2390a1bf5539375460e0">
source/commands/makefilecommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#18fe12906bfd06650077e172478e90735961a141">
source/commands/makefilecommand.h
</a>
</li>
<li class="file-stats">
<a href="#27d24204f15d40856fba1c86a1313127fb48b9c6">
source/commands/makegroupcommand.cpp
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</li>
<li class="file-stats">
<a href="#9ba8b5d8e233ff25b034323deb12971e762fac11">
source/commands/makegroupcommand.h
</a>
</li>
<li class="file-stats">
<a href="#76577abb23edfca52c586da95321aea2eb915fe3">
source/commands/pcrseqscommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#1d632589c905d230e5dbd0ca35edbeebde670dcc">
source/commands/preclustercommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#0611af6a210e9f4957553fe44760b3cc1955e11e">
source/commands/removelineagecommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#ade7a7a2384dfb1191c56833c7c66b796f65906e">
source/commands/renameseqscommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#b81cd234d031a24c8bf36248af3a7342a8cf0b49">
source/commands/renameseqscommand.h
</a>
</li>
<li class="file-stats">
<a href="#5d4cfa73f167a7dae18d68fbf327b9fa9649dd80">
source/commands/setcurrentcommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#9f26ce25a931af5f64767d96d6bbf59c5dc15d77">
source/commands/sracommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#988b022601b623550061bc7a1c014dbe08769bfc">
source/commands/subsamplecommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#fe119fb978bccc0de8cd41c62e60f0d92305ac7f">
source/datastructures/filefile.cpp
</a>
</li>
<li class="file-stats">
<a href="#89eebe19f4e34d4cb0d6945641c56d0a2172a0f7">
source/datastructures/filefile.hpp
</a>
</li>
<li class="file-stats">
<a href="#4910c2e493799fe40549f47b2a64a205697f712a">
source/datastructures/oligos.cpp
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<p style="font-size: small; color: #737278;">
—
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<a href="https://salsa.debian.org/med-team/mothur/-/compare/15bd40b9d3323ec743660bb00d9852a1b20852b3...01f1324c8120146b88b872a1363125462e30d9bb">View it on GitLab</a>.
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