<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/spades">Debian Med / spades</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/3788a5b649f771921b476d01181c2e3dc33234cb">3788a5b6</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-06-27T09:27:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Changing the paths of the files to remove when repacking
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/4a465de5248a47c1c056800e66f9c2e7c76678c9">4a465de5</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-03T09:45:02+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating the list of files to exclude when repacking
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/8a1add9cc5a502055147c03e6616cf4cb8e7c6ae">8a1add9c</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-03T09:45:58+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 4.0.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/1cb336a860a789f49f0b3586cac73809bbc1a77f">1cb336a8</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-03T09:46:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/4.0.0+dfsg'

Update to upstream version '4.0.0+dfsg'
with Debian dir c1f57e9abbb3108deb5cb2c0b564f41dbfd670e2</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/88b0f63eb1cf4a89afe78cee9bc06244ac32cfc6">88b0f63e</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:28:49+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>HTML pages are not shipped anymore in the source
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/ac7bfe6aacbf97052694e55b8775de4ac498f8a3">ac7bfe6a</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:40:04+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Removing the now useless override of dh_installchangelogs
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/4ebd9bf9630187c70c0e993b9d6574b4b0bf1752">4ebd9bf9</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:45:54+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/5d777a519c4fa59054648eaf05caee837cfa4669">5d777a51</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:46:37+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Using googletest and spoa from their Debian packages
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/04910e360915d9f777fe6fe74889f523b0621ef8">04910e36</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:46:53+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Using bamtools from its Debian package
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/7bdad29ebd148e53f38c521f8ab86b9e7225fa18">7bdad29e</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:47:29+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating paths in d/rules
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/6fadd28514e75bed32195c74b9572502108a1e48">6fadd285</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:47:44+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Passing arguments to Boost from d/rules
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/2d606cbac51a729db60e9e7ec1552c910e18c71e">2d606cba</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:48:28+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Using cuckoo and xxhash from their Debian packages
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/4b85f1dc4f05305f50262a56d1620c1551540295">4b85f1dc</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:49:03+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adding missing files to the CMakeLists.txt file of the samtools part
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/d05f2c2b5185c4a59187b1f90d63305eb57c5a21">d05f2c2b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:49:29+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Deactivating build-time tests of which test data have vanished from the source package
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/c4d408f51555bf12547da607bd410d337898b745">c4d408f5</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:50:27+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating build-dependencies after some libs are drawn from the Debian packages instead of embedded copies
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/289551f03d4850f79b2a8b78de34b02e351cf632">289551f0</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:51:11+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Raising Standards version to 4.7.0 (no change)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/985594cd6ae4aa81a081e6ba0a41472233da0f2f">985594cd</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:53:08+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating homepage URI
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/f09dd320eb13a02a8871705898744ba4da36cdda">f09dd320</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T21:59:12+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Removing obsolete Lintian override
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/c150ef4debabeb05dbf980cc8acb1926c6e2cb52">c150ef4d</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T22:02:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/8d8ee9772e2a14dc4f4af7218603e87a02e67e73">8d8ee977</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T22:03:52+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Sorting the list of build-dependencies
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/93d06af4fe02369002238f55f1cce53fe13af839">93d06af4</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T22:13:12+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Removing binary files when repacking
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/25389a9462c05f636a8713aea5d57adf3a0fcb60">25389a94</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T22:13:58+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 4.0.0+dfsg1</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/9b32b73510c522f714142dea55672f673b4cabc5">9b32b735</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T22:14:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/4.0.0+dfsg1'

Update to upstream version '4.0.0+dfsg1'
with Debian dir 49af7718eb8d7d07878833d76bf60607d9c6c55d</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/c2674fddc6c5f8da575037e604a828503a0e8e1d">c2674fdd</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-04T22:14:51+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/a5e6a6d7ba6ae166998b3c7152d9986484b565b0">a5e6a6d7</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-05T21:17:25+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Rewriting d/copyright
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/b0782ba390fead00073a034a03a283da47f511ed">b0782ba3</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-05T21:22:22+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adding a Lintian override for the embedded (modified) copy of Zlib
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/55f78536daa849d2b25f415eb394210e0d5b609e">55f78536</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-05T22:14:32+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Marking bwa_zlib patch as Forwarded: not-needed
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/b5984ac708916e746908eb31b0a5efcdf2aedf5a">b5984ac7</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-05T22:24:14+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fixing mistakes in d/copyright
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/a1ddbbe2931a888523414bf27d6c1dc581f6f2fe">a1ddbbe2</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-06T14:13:08+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Using Debian-packaged joblib
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/d992049c6345e1f6f0ddd3b4d269cd2464f32846">d992049c</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-06T14:13:17+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patch
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/spades/-/commit/0bb5566649a77ddaa9bcb374ffdfe74b62331aae">0bb55666</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-07-06T14:14:29+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Updating changelog
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
21 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#01a718df87a96135eb956401504e555421dc5a3d">
assembler/.clang-format

.clang-format
</a>
</li>
<li class="file-stats">
<a href="#3fcac755ee1270a77a9c5042beab12617b51f2be">
.github/ISSUE_TEMPLATE/config.yml
</a>
</li>
<li class="file-stats">
<a href="#e0c402299c92f5f06c3846f4a30db2e2435f2e60">
<span class="new-file">
+
.github/workflows/basic.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#592c4fe9ab95ac8c83e1a7e803fbe5a8dc007e97">
<span class="deleted-file">

.github/workflows/basic.yml.disabled
</span>
</a>
</li>
<li class="file-stats">
<a href="#f77558a0cba95fa2ac6c74be338fafa09fda0050">
<span class="new-file">
+
.github/workflows/docs.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#6ada13bc91e33126a136b938eddc2f10ac52a97a">
<span class="new-file">
+
.github/workflows/full_runs.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#56289ab4d5faf12659dd0d7d104162d00c82f148">
<span class="new-file">
+
.github/workflows/gcc.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#013a4a3a2c061eb7dc4eefd8bbd402e3050e4a1a">
<span class="new-file">
+
.github/workflows/iontorrent.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f7eb956289acefd9ec93887e1969fe22967c29f9">
<span class="new-file">
+
.github/workflows/isolated.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#438a19f8f3843b40e6b583c1fcdd15a0398c83d9">
<span class="new-file">
+
.github/workflows/long_reads.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f7d28650338750c54ef8b9ef570bda0d33176af9">
<span class="new-file">
+
.github/workflows/mate_pairs.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#6bf2978cd9c3f7fe270fe6a993291f5c74b22155">
<span class="new-file">
+
.github/workflows/meta.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#16911b9809e0d05b7b124ba8453fa5303d74924c">
<span class="new-file">
+
.github/workflows/release.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#5531df2dd6d385b5dba58c521636350ce395d24d">
<span class="new-file">
+
.github/workflows/rna.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#bfe37688198f606b1ffc79aba4e14b5cbe992d3f">
<span class="new-file">
+
.github/workflows/single_cell.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#6049f2543fdb0084b0f7bc8e64a9d51649674c84">
<span class="deleted-file">

.github/workflows/spades-test.yml.disabled
</span>
</a>
</li>
<li class="file-stats">
<a href="#23e2f0c25a44097a727a0cfdcfd446793f0762f1">
<span class="new-file">
+
.github/workflows/sra.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#c47852415639c9a52ef5e39633b9334a534626c3">
<span class="new-file">
+
.github/workflows/update_saves.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#e332b6814bda7c4cb065815396445b2d1955e600">
<span class="new-file">
+
.github/workflows/usecases.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#000f917e4540054e9b73ff74054cf9077e73573f">
assembler/GPLv2.txt

GPLv2.txt
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
<span class="new-file">
+
LICENSE
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/spades/-/compare/4ddf872cb4062f28a8457f72fae39df0d3ba88e8...0bb5566649a77ddaa9bcb374ffdfe74b62331aae">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>