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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Aaron M. Ucko pushed to branch master at <a href="https://salsa.debian.org/med-team/ncbi-blastplus">Debian Med / ncbi-blastplus</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/67807fe08f09dc9e351c079626e9a84559c19386">67807fe0</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-17T21:22:59-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.15.0+ds</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/fbfbf2eea3020b42352c4755b428a86e39a6204d">fbfbf2ee</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-17T21:28:39-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Merge tag 'upstream/2.15.0+ds' (#1074316).
Upstream version 2.15.0(+ds) should be (more than) new enough for
recent q2-feature-classifier, which merely needs at least 2.13.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/abe67c72cfb015f1947a0ed33fd100635d9a5ab4">abe67c72</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-17T21:39:29-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: Update for new release (2.15.0[+ds]), mostly formally.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/c492f265d927f4b0d8191cb9d7ddf32a5895e44c">c492f265</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:20:45-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>BDA on libnghttp2-dev, libsqlite3-dev, and libuv1-dev, newly needed.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/135c5cbd077bdb2ff35e87b2b502dc6305bfd1f1">135c5cbd</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:29:52-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Move debian/patches/system_mbedtls_only up and extend it.
* debian/patches/series: Move system_mbedtls_only up in conjunction
with incorporating part of an upstream patch needed by
support_mbedtls3.
* debian/patches/system_mbedtls: Extend to cover ncbi_mbedtls.c (as in
https://github.com/ncbi/ncbi-cxx-toolkit-public/commit/f9c7297dd1)
and Makefile.xxconnect2.lib.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/a3d3e49505dbb1eb7c6887b035c201fe1c83d1e8">a3d3e495</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:30:47-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/p/support_mbedtls3 (new): Support Mbed TLS 3.x (#1075867).
Don't specifically require it, though.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/f9d9727883ca7b3e6074e8162b7bcfe6c2f0fd83">f9d97278</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:30:56-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Regenerate configure and config.h.in with Autoconf 2.69.
To that end, add a B-D on autoconf2.69.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/bdc3fc7fcf651a6a0a33789491d7d0d280cbdba1">bdc3fc7f</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:31:22-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Make it possible to build against PCRE2, and do so (#891197).
* debian/control: Build against libpcre2-dev.
* debian/patches/allow_pcre2 (new): Allow use of PCRE2.
* debian/rules: Build against PCRE2.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/8f6aa0b1865ba3eeb857a4c3376d8b339d41a2d7">8f6aa0b1</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:31:32-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches after prepending allow_pcre2 and support_mbedtls3.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/ad520e4e99a520027a7eeb6975b8eaf4d16d5e03">ad520e4e</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:31:32-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/rules: Add --without-strip, disable reproducible=timeless.
Tune flags: Add --without-strip to make --with-symbols effective;
switch off warnings from __DATE__/__TIME__ usage, since
dpkg-buildpackage's SOURCE_DATE_EPOCH injection should suffice.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/e016e5974f3b50ca659870bbe83d2cd89b198d25">e016e597</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:32:00-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/patches/series: Comment out reprobuild (overkill).
I'm all for reproducibility, but the package already automatically
builds with flags that make __FILE__ relative, and many of its uses
are in header-defined macros that intend to pick up their callers'
paths.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/a1513d3e7dab1f9a88bd2689d2ead8590c4baf69">a1513d3e</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:32:03-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/rules: Extend generated-sources cleanup to objtools/eutils.
Not entirely straightforward due to input format variation.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/6bdc2344f841c079b6e558c98e39e591e893ecfa">6bdc2344</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-22T23:32:03-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/source/lintian-overrides: No more rapidjson10 (just ...11).
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/a9e68c3454d544b30501a9a43eeb111618bdff40">a9e68c34</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-25T20:00:49-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Stop relying on 2to3 at build time.
* debian/control: Stop building against 2to3, which may not be around
much longer.
* debian/patches/allow_pcre2 (new): Allow use of PCRE2.
* debian/rules: Drop build-time 2to3 invocation in favor of
debian/patches/2to3.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/e69e9a2f4c6f482245434666ca15379112a6cdfe">e69e9a2f</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-25T20:02:52-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.16.0+ds</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/e5d75ace958a65e2aeb82535217c0a5d3f981fd4">e5d75ace</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-25T20:40:28-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Merge tag 'upstream/2.16.0+ds'
Upstream version 2.16.0(+ds).
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/4678cd3f00e5b297a4b05fb6c6efc4b8ca651f39">4678cd3f</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-25T20:41:04-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.7.0
</pre>
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<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/19a32770759c2fd739108707f81e2881d0f76390">19a32770</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-25T20:41:15-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update patches again for 2.16.0(+ds).
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/1411bc81806aad716ae2e204821a73378587bf88">1411bc81</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2024-07-25T20:41:31-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Finalize ncbi-blast+ 2.16.0+ds-1 for unstable.
</pre>
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</ul>
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