<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: var(--default-regular-font, "GitLab Sans"),-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/70a44268705c7a8a170c525db05d059dd23e7212">70a44268</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-09T10:06:24+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 39.08+dfsg</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
23 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#46288c4e61cdadc81fa9d617eb8255dc9c47282d">
bbmerge.sh
</a>
</li>
<li class="file-stats">
<a href="#0036b9b0b45ea6c3f9e3607e6ca2fe3f21acad80">
<span class="new-file">
+
cg2illumina.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c8674c14171acbe21288fc84fb6f34ceef3c56c">
<span class="new-file">
+
comparelabels.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#e483fc99bbd38db1157303f47197decddbf8f699">
countbarcodes.sh
</a>
</li>
<li class="file-stats">
<a href="#fa5cfa4ee2ae491f686329c546d27cfb168dc6e8">
countbarcodes2.sh
</a>
</li>
<li class="file-stats">
<a href="#f782d3f5f2a0caac382364db133ebecf2eb318b5">
current/align2/RandomReads3.java
</a>
</li>
<li class="file-stats">
<a href="#14f30e18717d2fc09a1eba6235981a2fe1a4e216">
current/aligner/AllToAll.java
</a>
</li>
<li class="file-stats">
<a href="#c6c26e9b260aca5adc39a873a0b92f42083bd86a">
<span class="new-file">
+
current/aligner/MicroAligner.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#07cce4c2b9809b6dd49ed496ae2e775ff3de48a5">
<span class="new-file">
+
current/aligner/MicroAligner2.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ae1d758006d32236c91f5856595b2b10154b6d4">
current/aligner/SingleStateAlignerFlat2.java
</a>
</li>
<li class="file-stats">
<a href="#c83b8870014d3f3c36343d260d6769bfe0926238">
current/assemble/TadPipe.java
</a>
</li>
<li class="file-stats">
<a href="#0649373d712b82431ce0035c12a50b946f76c5a3">
current/barcode/AnalyzeBarcodes.java
</a>
</li>
<li class="file-stats">
<a href="#d94036d98153bc9d93350aad2e029cb3d1263cc1">
current/barcode/Barcode.java
</a>
</li>
<li class="file-stats">
<a href="#fd1cb1cec39bc74e4569ed92d6debee1089d77e8">
<span class="new-file">
+
current/barcode/BarcodeCounter.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#33ee4412df1c6f619f74f6ca8cdaf3183a76086f">
current/barcode/BarcodeStats.java
</a>
</li>
<li class="file-stats">
<a href="#799b716c5d6999d931a20cfac44d34c29dfeb31d">
<span class="new-file">
+
current/barcode/CompareLabels.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#124b75f2d25621f8ed8588f3a09b91374e6b3b61">
current/barcode/CorrelateBarcodes.java
</a>
</li>
<li class="file-stats">
<a href="#ce9b7a3937e82b3b6c5dabac35d0811b3e6ee517">
current/barcode/CountBarcodes.java
</a>
</li>
<li class="file-stats">
<a href="#0a39039f707dfac37888d60e4c6300805bdde956">
current/barcode/CountBarcodes2.java
</a>
</li>
<li class="file-stats">
<a href="#31cf5b2232d7a08bcc349efd9bc2ff22f91981b4">
<span class="new-file">
+
current/barcode/DemuxClient.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#f333c4ead91878a1a0cae9c4c0b8cdbf94f46be2">
<span class="new-file">
+
current/barcode/DemuxData.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#26bda40f28491ee22674bf8c890fd76acd6e958d">
<span class="new-file">
+
current/barcode/DemuxServer.java
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/bbmap/-/commit/70a44268705c7a8a170c525db05d059dd23e7212">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/bbmap/-/commit/70a44268705c7a8a170c525db05d059dd23e7212"}}</script>
</p>
</div>
</body>
</html>