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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/6cb1fcde256945db65dd6fe2925ad40542fc7ab2">6cb1fcde</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-08-21T16:47:15+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/ae0404ed6db07b2fd3d8f3d4e06d0a6e40b6f598">ae0404ed</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-08-21T16:47:23+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.15.2+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/c12941fafff26f07ebb625dafadbc0eeeb43bf57">c12941fa</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-08-21T16:48:26+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.15.2+dfsg'
Update to upstream version '2.15.2+dfsg'
with Debian dir 5012689404eac0367150d78438461ceb2050d40d</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/19d5c53906aca6b9a4331ebfdc1f8d69d0dfcf5b">19d5c539</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-08-21T16:59:37+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Delete patch R_4.2_fix, it was applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/27538d9c4f7409b8ce246a71f4c620a4c2457b8a">27538d9c</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-08-21T23:59:34+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
20 changed files:
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<li class="file-stats">
<a href="#c8f064a997862c81dcee2544e28c7e36e11ba0a6">
Analysis/DifferentialExpression/PtR
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<li class="file-stats">
<a href="#77efacca56c36a257ce9b4d838b240e15603ef7b">
Analysis/DifferentialExpression/R/heatmap.3.R
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<li class="file-stats">
<a href="#5cfa75d997a00c471125836feb6596e962a96899">
<span class="new-file">
+
Analysis/DifferentialExpression/dexseq_given_bams.pl
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<li class="file-stats">
<a href="#802d0cf48e06523644087b90a072da656ca7e334">
Analysis/DifferentialExpression/run_GOseq.pl
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<li class="file-stats">
<a href="#27c36e24f43df2bee21fccb410359a30298516e1">
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+
Analysis/DifferentialExpression/sum_tech_replicates.pl
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<li class="file-stats">
<a href="#9d7d66f338f0fe86ecd2ae542ce0703b0e1e5aaa">
Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
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<li class="file-stats">
<a href="#36238d5fa26683466193f61b8d724919bec12681">
Changelog.txt
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<a href="#56cd058343dc500d70fb6c2c4aac98dc5da7cbe5">
Docker/Dockerfile
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<li class="file-stats">
<a href="#b6ce619255b7ed6731c8b6f6a057e5fde57c1b8f">
Docker/README.md
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#fe1f3f0432df49e752b342651a4544704be40e18">
Trinity
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#e1497556c0b8e98bedc4ad375be30bf4099ff753">
<span class="deleted-file">
−
debian/patches/R_4.2_fix
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</li>
<li class="file-stats">
<a href="#fac0c62d9b907e6be145e02cf3d336278225d633">
debian/patches/fix-gcc-10.patch
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<li class="file-stats">
<a href="#9c3921224f13bb64ee0668e34e9072c2d81fed1e">
debian/patches/fix_system_paths
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#47bc5d0dfe2f4008180506114f96d4d825b32a7e">
trinity-plugins/ParaFly/Makefile
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<li class="file-stats">
<a href="#58808a323b7597fcbb93eb50eb2f2794b489842d">
trinity-plugins/ParaFly/bin/ParaFly
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<li class="file-stats">
<a href="#94934439ac72e34558054dc65f3761b5657c8af0">
trinity-plugins/ParaFly/config.log
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<li class="file-stats">
<a href="#0d0b4d11f0d6e3a42906aff6ec26901045dda0e7">
trinity-plugins/ParaFly/config.status
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</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<p style="font-size: small; color: #737278;">
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