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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/centrifuge">Debian Med / centrifuge</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/fea1ee6e378fef683d34880d2a74ec7557e8ddc8">fea1ee6e</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T16:12:48+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.0.4.1</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/a7ea5a787787ffb84a1c6e948f79a0468e18990c">a7ea5a78</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T16:12:50+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.0.4.1'
Update to upstream version '1.0.4.1'
with Debian dir 7135a2a10d93e2d1a8b78561158ff996e5613b70</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/5046bdb91225096d4760c0fccf4d8197b015f5a3">5046bdb9</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T16:13:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: add myself to uploaders.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/5e89d8dd3a0257113b420d983bbbad0ec6c8509b">5e89d8dd</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T16:14:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: declare compliance to standards version 4.7.0.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/08d231c83381d8ecb95b4e8063fda772df3ab8d1">08d231c8</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T16:45:40+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/s/lintian-overrides: flag false positive missing source.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/02a2597f612c3d63a7bd2aafb8876f8b53b61dc0">02a2597f</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T16:46:02+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>no_msse2.patch: unfuzz.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/661a59400e53ae2cf83b3f526ff9b71a2eac529b">661a5940</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T16:54:10+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix_auto_ptr_usage_in_gcc-7.patch: delete: applied upstream.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/18e2e1e5e80a0559d6e6a779cd6118e96d90199b">18e2e1e5</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T16:58:12+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>0002-Fix-build-with-rank.patch: apparently not needed anymore.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/7b12254dd26a40d72ebe5ae12df27f27022a74c6">7b12254d</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T17:03:08+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/copyright: refer to the versioned GPL-3 file.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/centrifuge/-/commit/ae589c52d70d2f8a57870662183f0fa55aeebb38">ae589c52</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-08-25T17:03:55+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Ready for upload to unstable.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
27 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#f11fb3bba37e7060bedcd5895812b7c511c52651">
MANUAL
</a>
</li>
<li class="file-stats">
<a href="#465370da702349b6dcb3f9f2026872cad6877efa">
MANUAL.markdown
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#5caf7b101f4ba008ee8d93f74a20baefcf2b451a">
aln_sink.h
</a>
</li>
<li class="file-stats">
<a href="#d1904db8401bf0137951f60c3d4a34a7cf8e2e84">
bt2_idx.h
</a>
</li>
<li class="file-stats">
<a href="#41d7cf0a70d6646143fcc7c19940dfecaea6ba9b">
bt2_io.h
</a>
</li>
<li class="file-stats">
<a href="#59b83604953a3f26d3eb5642de1c646924dd022b">
centrifuge
</a>
</li>
<li class="file-stats">
<a href="#c20cae16fc09532de0ec5739457a9ac18644f558">
centrifuge-BuildSharedSequence.pl
</a>
</li>
<li class="file-stats">
<a href="#d8f5fe0588502d1a8ca61541057cc297e42bc963">
centrifuge-download
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</li>
<li class="file-stats">
<a href="#fd1054bfea308886c08eb1c3c254619085646a47">
centrifuge-kreport
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<li class="file-stats">
<a href="#5e28451c048cf424257052950561e0cae5208bf9">
centrifuge-promote
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</li>
<li class="file-stats">
<a href="#3e44d076ff9b15d146f6db332bac2d871b3f4c64">
centrifuge.cpp
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</li>
<li class="file-stats">
<a href="#91cdf05e4df55f0081ed34ed08197e4ca9fb290c">
centrifuge_build.cpp
</a>
</li>
<li class="file-stats">
<a href="#76b9cf419128271c3ba81266bbe72935eda909f9">
centrifuge_inspect.cpp
</a>
</li>
<li class="file-stats">
<a href="#4d3778d4c482b69d10dbd5975319cc35b317d046">
classifier.h
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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</li>
<li class="file-stats">
<a href="#728d84530a13d46f979d34ae0d330108eb743d8d">
<span class="deleted-file">
−
debian/patches/0002-Fix-build-with-rank.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#a59677e83f40bbe80fb482e7a3acf2afab11a4d8">
<span class="deleted-file">
−
debian/patches/fix_auto_ptr_usage_in_gcc-7.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#c0cdc46f345c5f6e7ac58a9c2a918898333a9787">
debian/patches/no_msse2.patch
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</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#85ccdeeb03055211183e48520592d9a93592b330">
debian/source/lintian-overrides
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</li>
<li class="file-stats">
<a href="#9f15b0fe50d277c8d231ce47c6a42a8355f51ff0">
diff_sample.h
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<li class="file-stats">
<a href="#7c736686be17c94de81a8c3083963bd596d6b36f">
doc/index.shtml
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
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