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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/bwa">Debian Med / bwa</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bwa/-/commit/34e233d48f69465a42261aba175d346d36fc94b1">34e233d4</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-09-07T13:38:06+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bwa/-/commit/3ed9d81289b3e055570432bfbb39b3a76ba42d57">3ed9d812</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-09-07T13:38:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.7.18</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bwa/-/commit/92140cf3753a2696fed39bb4d3ae48b9b4b85696">92140cf3</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-09-07T13:38:07+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/0.7.18'
Update to upstream version '0.7.18'
with Debian dir ac8401be07bd0eb1fd4fff0230cae015c9501ed3</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bwa/-/commit/604046f1af9f9cb3fefa98ec16c5fae5ed1ae3b8">604046f1</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-09-07T13:38:07+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Standards-Version: 4.6.2
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bwa/-/commit/a4ad6e54b2803636d6323e29c819eede7970171e">a4ad6e54</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-09-07T13:38:12+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bwa/-/commit/ee8aed6e798cef7418e572c0cfef37df6525e986">ee8aed6e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-09-07T13:57:38+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Removed 2 patches applied upstream (CVE-2019-10269, gcc10). Removed no-longer-needed SIMDe patch.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bwa/-/commit/bea16f67f549279c57224fc98e30d7a803f65db8">bea16f67</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-09-07T13:58:12+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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.github/workflows/ci.yaml
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Makefile
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NEWS.md
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README.md
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bntseq.c
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bntseq.h
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<a href="#fffd241a829bcbd6afcc0c9156e30dc1db5b03e0">
bwa.1
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<a href="#361024b07e1c6663f456b623ff886e561381da2f">
bwa.c
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bwa.h
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bwakit/bwa-postalt.js
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<a href="#98f93a69d8f0f09f5fd08107e54686fdfd27a23b">
bwamem.c
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bwamem.h
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bwamem_extra.c
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bwamem_pair.c
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bwt.h
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bwtindex.c
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debian/changelog
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debian/control
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debian/patches/CVE-2019-10269.patch
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debian/patches/spelling
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fastmap.c
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ksw.c
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main.c
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rle.h
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The diff was not included because it is too large.
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