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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/macs">Debian Med / macs</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/macs/-/commit/74e9595fec341d1244e1afe615d1e66e72296a5b">74e9595f</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2024-09-07T22:32:48+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.0.2</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#db0bcfaeb467ef23b0695e02e63dcf5710b98ae1">
.github/workflows/build-and-test-MACS3-macos.yml
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</li>
<li class="file-stats">
<a href="#f8c65bdf3ca49106885041821a56af9bfe51f8f5">
.github/workflows/build-and-test-MACS3-non-x64-others.yml
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</li>
<li class="file-stats">
<a href="#5fca4a277c7fe3039bd98932d6f4047be18d5b4b">
.github/workflows/build-and-test-MACS3-non-x64.yml
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</li>
<li class="file-stats">
<a href="#117c01e3f0933c3b1e39f3ed43e4b2a5922e4e7c">
.github/workflows/build-and-test-MACS3-x64.yml
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</li>
<li class="file-stats">
<a href="#65058c6b7d637fe4c9f4b6f029094be0baee913e">
.github/workflows/publish-to-gh-with-sphinx.yml
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<li class="file-stats">
<a href="#915e264dc568ca58137c18d53ef0c3ef8c0e53e5">
.github/workflows/publish-to-pypi.yml
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<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<li class="file-stats">
<a href="#c0710f2195de11308694e5056f0d9502733a44d0">
MACS3/Commands/bdgbroadcall_cmd.py
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</li>
<li class="file-stats">
<a href="#d657735a7830ad75c81c998ae130a1c32abd3dee">
MACS3/Commands/bdgcmp_cmd.py
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</li>
<li class="file-stats">
<a href="#0e39786dfdd90f5ed25d6da46ff63752ab07f85f">
MACS3/Commands/bdgdiff_cmd.py
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</li>
<li class="file-stats">
<a href="#ef2e132ad0b99c2f7f2981614e5f46a8e00de35a">
MACS3/Commands/bdgopt_cmd.py
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</li>
<li class="file-stats">
<a href="#e68de698546fc7a1e1db62076e33c2aee34f9930">
MACS3/Commands/bdgpeakcall_cmd.py
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</li>
<li class="file-stats">
<a href="#5773e4d824150ee61dd9895913733cbe375e6406">
MACS3/Commands/callvar_cmd.py
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</li>
<li class="file-stats">
<a href="#0f498649258646d2ac486db6156e263cf7104d37">
MACS3/Commands/cmbreps_cmd.py
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</li>
<li class="file-stats">
<a href="#e4c931cdc9cbef6af4b1a5d7c1cadcdf12143ede">
MACS3/Commands/hmmratac_cmd.py
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</li>
<li class="file-stats">
<a href="#02d0c2fc63510f50d2d78c779b9de052704c90bb">
MACS3/IO/BedGraphIO.pyx
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</li>
<li class="file-stats">
<a href="#6f4ecb8506cde9da544bbef2071cc58c60ebced5">
MACS3/IO/PeakIO.pyx
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<li class="file-stats">
<a href="#ad4c146bdb4989a5cb4cd3704bd125acd1753141">
MACS3/Signal/BedGraph.pyx
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<li class="file-stats">
<a href="#f7133f1fe51c383a71695a329a6186c63d203e75">
MACS3/Signal/HMMR_HMM.pyx
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</li>
<li class="file-stats">
<a href="#797d691cac13a61af6cfafef9f03d351b753567a">
MACS3/Signal/HMMR_Signal_Processing.pyx
</a>
</li>
<li class="file-stats">
<a href="#9745de2e37d2c63d8d4666e1deb0276b574f8af2">
MACS3/Signal/PileupV2.pyx
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</li>
<li class="file-stats">
<a href="#716ab2f449982c328d7b80925a16897f77b3de5c">
MACS3/Signal/ScoreTrack.pyx
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</li>
<li class="file-stats">
<a href="#ec309566975dceb33e4e435b985a354cee87357e">
MACS3/Signal/SignalProcessing.pyx
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</li>
<li class="file-stats">
<a href="#9ad7d290af8b024d8bc3dfaa58f020b8dd6e3d18">
MACS3/Utilities/Constants.py
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</li>
<li class="file-stats">
<a href="#35bfe63ebe80873ae427a0f89ab6f09617da8f30">
MACS3/Utilities/OptValidator.py
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</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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</li>
<li class="file-stats">
<a href="#484b2859e5147aeca220ecf699db8396df5046f5">
bin/macs3
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</li>
<li class="file-stats">
<a href="#d1e5f2ed67d4b695ec7949ca07644776c8c8ec11">
conda/macs3/meta.yaml
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</li>
<li class="file-stats">
<a href="#cdf904ec26f5943dab905474644a403f7e20bf34">
<span class="deleted-file">
−
docs/Advanced_Step-by-step_Peak_Calling.md
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</a>
</li>
<li class="file-stats">
<a href="#adf144f57098687d6b958a6143cce31566e93b81">
<span class="deleted-file">
−
docs/INSTALL.md
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</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
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