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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/6c854f027f249268aa4732b950c9e72aa40071a6">6c854f02</a></strong>
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<span> by Étienne Mollier </span> <i> at 2024-09-18T23:10:16+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 39.09+dfsg</pre>
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<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/7c34d5cce627e7f570d4769db14aa85154278551">7c34d5cc</a></strong>
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<span> by Étienne Mollier </span> <i> at 2024-09-18T23:10:24+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/39.09+dfsg'
Update to upstream version '39.09+dfsg'
with Debian dir 6a4945f868a5b3b39f3dc44dc558523e25942b71</pre>
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<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/e58409985fbc24875fcae3b1b8461642675e8778">e5840998</a></strong>
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<span> by Étienne Mollier </span> <i> at 2024-09-18T23:16:49+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #333238; position: relative; font-family: var(--default-mono-font, "GitLab Mono"),"JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Ready for upload to unstable.
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#3202aa6f34f5e290ad67ab6fe767b214272508f0">
bloomfilter.sh
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build.xml
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<li class="file-stats">
<a href="#3a1986fa996843fd189501d65900ee801c1a9bf2">
calcmem.sh
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<a href="#0036b9b0b45ea6c3f9e3607e6ca2fe3f21acad80">
cg2illumina.sh
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<a href="#be7260b2e2b4ab59dbd69285dbc941c2cbcff3af">
current/align2/AbstractMapper.java
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<li class="file-stats">
<a href="#8023a4926ea3329eac15850095fd011835c0606d">
current/align2/BBMap.java
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<a href="#f50d097c627a469ad0ecf95d57afabb3405b2b27">
current/align2/BBMap5.java
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<a href="#36210f0aa49b80397ff11d10a459ae9daf6625ed">
current/align2/BBMapAcc.java
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<a href="#64e557b9d4b26716abcebbd933081d2b3039b6b5">
current/align2/BBMapPacBio.java
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<a href="#244ad82cdd9b818adc2a3fb9103c3c7beb7db2c9">
current/align2/BBMapPacBioSkimmer.java
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<a href="#c6c26e9b260aca5adc39a873a0b92f42083bd86a">
current/aligner/MicroAligner.java
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<a href="#7325505e925acb2556d8e0d25d4b41776875fc57">
current/assemble/Tadpole.java
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<a href="#33ee4412df1c6f619f74f6ca8cdaf3183a76086f">
current/barcode/BarcodeStats.java
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<a href="#0a39039f707dfac37888d60e4c6300805bdde956">
current/barcode/CountBarcodes2.java
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<a href="#26bda40f28491ee22674bf8c890fd76acd6e958d">
current/barcode/DemuxServer.java
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<a href="#82719727cfa9708d9f7e11d4a53d4f1cb8d11bb0">
current/barcode/NovaDemux.java
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<a href="#e1743aa69daa8d3f08a969982d6b6f663c065ece">
current/barcode/PCRMatrix.java
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current/barcode/prob/PCRMatrixProb.java
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current/barcode/stub/PCRMatrixProb.java
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<a href="#625b01dd07ab8c17e034a963523e888661fec1b1">
current/barcode/prob/PCRMatrixProbAbstract.java
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current/barcode/stub/PCRMatrixProbAbstract.java
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<a href="#d1a44b399f05534e4df499fd56efa8010cd9bc47">
current/barcode/prob/PCRMatrixTile.java
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current/barcode/stub/PCRMatrixTile.java
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<a href="#6d5c881576ef1d9ee79fa9d1106dc627c0efed8f">
current/bloom/BloomFilter.java
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<a href="#05837d90ec8239608f9efb9e98ed84c15e593144">
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current/bloom/PolyFilter.java
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<a href="#6f94a784da27f2d78ec6e478e33165f906ff2415">
current/driver/FilterReadsByName.java
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<a href="#0fb857ddf8d67eed604b2b1b3f08daf430f1feeb">
current/fileIO/FileFormat.java
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<a href="#a7b295a8bc85d8cdd1ef2ee5eff1375704e771b9">
current/fileIO/ReadWrite.java
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<a href="#98afc0ad18a57e04ab94eeec6c3c20babf385c69">
current/hiseq/AnalyzeFlowCell.java
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<a href="#933cc88866938ae177d366b920df61a767f22351">
current/hiseq/BGIHeaderParser.java
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<a href="#29ba5f2414ee7f7fa3a02efc442e4de9ca1ee5dd">
current/hiseq/BGIHeaderParser2.java
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<a href="#7bc5d3fb0bc790a92f4076fe688713e72cf2108f">
current/hiseq/FlowCell.java
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The diff was not included because it is too large.
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—
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<a href="https://salsa.debian.org/med-team/bbmap/-/compare/cef006dd4452b31149ed9481cae8787f7d051592...e58409985fbc24875fcae3b1b8461642675e8778">View it on GitLab</a>.
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