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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch master at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/igv/-/commit/a62ff2fc3ca86376c0a621174eb5bee236f774a7">a62ff2fc</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-10-12T22:27:48+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.18.5+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/igv/-/commit/77b923270b78dc815ccd0dc269f5e424260b84de">77b92327</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-10-12T22:29:25+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.18.5+dfsg'
Update to upstream version '2.18.5+dfsg'
with Debian dir 2bd50d372f8044a1fcf659d5e8dffdd6f84a461d</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/igv/-/commit/0aca0f31ed280ae1b7bfbba45e2bb6e036939957">0aca0f31</a></strong>
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<span> by Pierre Gruet </span> <i> at 2024-10-12T22:45:17+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Raising Standards version to 4.7.0 (no change)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/igv/-/commit/fe0acf81b4c09ac72073fa86141fef65e335190d">fe0acf81</a></strong>
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<span> by Pierre Gruet </span> <i> at 2024-10-13T21:57:13+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing the list of files to exclude when repacking
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/igv/-/commit/759b1d5e4f8767259214c3abc33abd81636d0890">759b1d5e</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-10-13T21:58:32+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshing patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/igv/-/commit/0582a07368a85b7ac9b7c11cc82ffccb64b5578f">0582a073</a></strong>
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<span> by Pierre Gruet </span> <i> at 2024-10-13T21:58:49+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Skipping more tests requiring the network
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/igv/-/commit/ff54c12b3e8c4520640202631e83dd2e208e24a7">ff54c12b</a></strong>
<div>
<span> by Pierre Gruet </span> <i> at 2024-10-13T21:59:19+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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.gitignore
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CONTRIBUTING.md
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README.md
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build.gradle
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debian/changelog
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debian/control
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debian/copyright
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debian/patches/gradle_dependencies.patch
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debian/patches/source_target_level.patch
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debian/patches/wrong_override.patch
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scripts/igv.sh
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scripts/igvtools
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scripts/mac.app/Contents/MacOS/IGV
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src/main/java/org/broad/igv/data/DatasetDataSource.java
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src/main/java/org/broad/igv/data/WiggleParser.java
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src/main/java/org/broad/igv/data/seg/FreqData.java
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src/main/java/org/broad/igv/event/IGVEventBus.java
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src/main/java/org/broad/igv/event/ViewChange.java
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src/main/java/org/broad/igv/feature/Chromosome.java
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src/main/java/org/broad/igv/feature/FeatureUtils.java
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src/main/java/org/broad/igv/feature/SpliceJunctionFeature.java
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src/main/java/org/broad/igv/feature/dsi/DSITrack.java
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src/main/java/org/broad/igv/feature/genome/ChromAlias.java
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src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java
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The diff was not included because it is too large.
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