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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Pierre Gruet pushed to branch upstream at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/igv/-/commit/a62ff2fc3ca86376c0a621174eb5bee236f774a7">a62ff2fc</a></strong>
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<span> by Pierre Gruet </span> <i> at 2024-10-12T22:27:48+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.18.5+dfsg</pre>
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30 changed files:
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<a href="#c36c878e4a824e41b1b476ece36b9a80ca94ffec">
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.github/workflows/gradle.yml
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<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#3f454a98e586d1aa0d322e19afd5e67e08f2d3c8">
CONTRIBUTING.md
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
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<a href="#a21cd47f471d78574815c875103673c2e0775094">
scripts/igv.sh
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<a href="#5c1935d491236d5309d34d58c4109ca93619fc52">
scripts/igvtools
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<a href="#b2ad4f95e9166cdcfdc9a10160c47c63eba86a87">
scripts/mac.app/Contents/MacOS/IGV
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scripts/mac.app/Contents/MacOS/main.c
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<a href="#1c89a5491fbfda3fb050196d6a239f20200296e7">
src/main/java/module-info.java
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<a href="#e107f201f7aa7f2b2e5747a5dfe291efcea7711c">
src/main/java/org/broad/igv/data/DatasetDataSource.java
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<a href="#2dc9445c8b07f77346f80839affd71abca4c6de9">
src/main/java/org/broad/igv/data/WiggleParser.java
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src/main/java/org/broad/igv/data/seg/FreqData.java
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<a href="#bf5aa1f83347b504446749632022816a34ca1e74">
src/main/java/org/broad/igv/event/IGVEventBus.java
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<a href="#71111dd44ff772860f35b37ef23bb49f99f1e3e2">
src/main/java/org/broad/igv/event/ViewChange.java
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<a href="#67f1f04ebb1d8d7f99a670fe9b5e9d4e293cc027">
src/main/java/org/broad/igv/feature/Chromosome.java
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<a href="#7f7e50a2c9b33428ef305a630511510e0425afde">
src/main/java/org/broad/igv/feature/FeatureUtils.java
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<a href="#c32ebd7fa40a7e1e5049b829990ef84e8ac60702">
src/main/java/org/broad/igv/feature/SpliceJunctionFeature.java
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<a href="#b3374cf4971b8bea1888c39d10f5785a21a36aea">
src/main/java/org/broad/igv/feature/dsi/DSITrack.java
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<a href="#457d8c74bebbb31efec0c65c81e6f83e1db9ed7c">
src/main/java/org/broad/igv/feature/genome/ChromAlias.java
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<a href="#7774537df99c19ef32ccd2c7d67db7649a073f1e">
src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java
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<a href="#2b832ec8e2b064269f79231c43bfd4f1739b1404">
src/main/java/org/broad/igv/feature/genome/ChromAliasDefaults.java
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<a href="#96a2bfc8a8525e881a3230473d4fffa0e41b0f7c">
src/main/java/org/broad/igv/feature/genome/ChromAliasFile.java
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<a href="#78588b7185a18d12a3145b62f82bad1e46d0e79a">
src/main/java/org/broad/igv/feature/genome/ChromAliasManager.java
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<a href="#3e9ca6fda6a46328e9f098a5f63779999915a8ca">
src/main/java/org/broad/igv/feature/genome/ChromAliasSource.java
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src/main/java/org/broad/igv/feature/genome/ChromosomeComparator.java
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<a href="#87f197ccc0a89b63177663a7f8f3beff9b22b267">
src/main/java/org/broad/igv/feature/genome/ChromosomeNameComparator.java
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<a href="#58e1ad1b32e35ec2f06bf31081f346e64ec97840">
src/main/java/org/broad/igv/feature/genome/Genome.java
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<a href="#8e61660f1b90c14fd5e0edc481b91810023dd589">
src/main/java/org/broad/igv/feature/genome/GenomeManager.java
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<a href="#a3f96de310c39639ea6b090f0934884c0e048849">
src/main/java/org/broad/igv/feature/genome/GenomeUtils.java
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The diff was not included because it is too large.
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