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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/a9e720c3ac1f7ac84319af846beb4318cb323e3f">a9e720c3</a></strong>
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<span> by Étienne Mollier </span> <i> at 2024-11-11T21:36:34+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 39.11+dfsg</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#67d907d61087ac2bc1410f5791ecd5d94426cc74">
bbduk.sh
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<li class="file-stats">
<a href="#46288c4e61cdadc81fa9d617eb8255dc9c47282d">
bbmerge.sh
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<li class="file-stats">
<a href="#3a1986fa996843fd189501d65900ee801c1a9bf2">
calcmem.sh
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<li class="file-stats">
<a href="#78797ea6810f7b973c1c65a35cedbd36a84ed2a4">
calctruequality.sh
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<li class="file-stats">
<a href="#be7260b2e2b4ab59dbd69285dbc941c2cbcff3af">
current/align2/AbstractMapper.java
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<li class="file-stats">
<a href="#8023a4926ea3329eac15850095fd011835c0606d">
current/align2/BBMap.java
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<li class="file-stats">
<a href="#f50d097c627a469ad0ecf95d57afabb3405b2b27">
current/align2/BBMap5.java
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<li class="file-stats">
<a href="#36210f0aa49b80397ff11d10a459ae9daf6625ed">
current/align2/BBMapAcc.java
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<li class="file-stats">
<a href="#64e557b9d4b26716abcebbd933081d2b3039b6b5">
current/align2/BBMapPacBio.java
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<li class="file-stats">
<a href="#244ad82cdd9b818adc2a3fb9103c3c7beb7db2c9">
current/align2/BBMapPacBioSkimmer.java
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<li class="file-stats">
<a href="#62b97e902920c150ab4ef1adf802e2702176e6f7">
current/align2/BBSplitter.java
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<li class="file-stats">
<a href="#7d3a65b56a85951ec983489580e35d4702f58ad6">
current/align2/GradeSamFile.java
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<li class="file-stats">
<a href="#7859942605e9da2515c6aa9bcc57a97bf2052a27">
current/align2/MakeQualityHistogram.java
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<li class="file-stats">
<a href="#a7b631d8f456e525c5472ef7e78fc664d1d0f267">
current/align2/MakeRocCurve.java
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<li class="file-stats">
<a href="#837464c66ce56be5e75f13536ae463a06333ac05">
current/align2/PrintTime.java
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<li class="file-stats">
<a href="#174bf373ba63cc448f958360fe7a83a4a4e92011">
current/align2/QualityTools.java
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<li class="file-stats">
<a href="#14f30e18717d2fc09a1eba6235981a2fe1a4e216">
current/aligner/AllToAll.java
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<li class="file-stats">
<a href="#c6c26e9b260aca5adc39a873a0b92f42083bd86a">
current/aligner/MicroAligner.java
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<li class="file-stats">
<a href="#07cce4c2b9809b6dd49ed496ae2e775ff3de48a5">
current/aligner/MicroAligner2.java
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<li class="file-stats">
<a href="#5fd72068eaaea445ac9325b37b106f2e704f74b7">
<span class="new-file">
+
current/aligner/SideChannel.java
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<li class="file-stats">
<a href="#71f0cbc97c5a6dcff4abac99b9d6e67422d8ada8">
current/assemble/KmerCompressor.java
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<li class="file-stats">
<a href="#f6f415de25e5b38af707a823e4fc39c6e3d77a95">
current/assemble/Postfilter.java
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<li class="file-stats">
<a href="#c83b8870014d3f3c36343d260d6769bfe0926238">
current/assemble/TadPipe.java
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<li class="file-stats">
<a href="#7325505e925acb2556d8e0d25d4b41776875fc57">
current/assemble/Tadpole.java
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<li class="file-stats">
<a href="#0649373d712b82431ce0035c12a50b946f76c5a3">
current/barcode/AnalyzeBarcodes.java
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<li class="file-stats">
<a href="#d94036d98153bc9d93350aad2e029cb3d1263cc1">
current/barcode/Barcode.java
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<li class="file-stats">
<a href="#799b716c5d6999d931a20cfac44d34c29dfeb31d">
current/barcode/CompareLabels.java
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<li class="file-stats">
<a href="#124b75f2d25621f8ed8588f3a09b91374e6b3b61">
current/barcode/CorrelateBarcodes.java
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<li class="file-stats">
<a href="#ce9b7a3937e82b3b6c5dabac35d0811b3e6ee517">
current/barcode/CountBarcodes.java
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
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