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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/a9e720c3ac1f7ac84319af846beb4318cb323e3f">a9e720c3</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-11T21:36:34+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 39.11+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/cb8bdc1503d84d7f6edb55394889aac5428d9181">cb8bdc15</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-11T21:36:43+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/39.11+dfsg'
Update to upstream version '39.11+dfsg'
with Debian dir e8c070231b8261b5e285017eeb4cbec0b4d2a627</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/7ca74d8a3ab07788aa0f107215edec7dac3c45b4">7ca74d8a</a></strong>
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<span> by Étienne Mollier </span> <i> at 2024-11-11T22:25:30+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/m/bbduk.sh.1: freshen the manual page.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/a44d43d3d8ed12483166c8d396ed26fe7f6910a6">a44d43d3</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-11T22:40:46+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/m/reformat.sh.1: freshen the manual page.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/fcf474fd33789f32581334866982b646f43199f4">fcf474fd</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-11T23:00:23+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/m/bbmap.sh.1: refresh manual page.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/93eca72b3ab5e858fb1e4c56b3f9c7dbe73f854e">93eca72b</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-11T23:04:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debug_symbols.patch: normalize Last-Update timestamp.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bbmap/-/commit/78ddc662f275cdb50c353947df795b1ec3fff319">78ddc662</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-11T23:05:27+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Ready for upload to unstable.
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#67d907d61087ac2bc1410f5791ecd5d94426cc74">
bbduk.sh
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<li class="file-stats">
<a href="#46288c4e61cdadc81fa9d617eb8255dc9c47282d">
bbmerge.sh
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<a href="#3a1986fa996843fd189501d65900ee801c1a9bf2">
calcmem.sh
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<a href="#78797ea6810f7b973c1c65a35cedbd36a84ed2a4">
calctruequality.sh
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<a href="#be7260b2e2b4ab59dbd69285dbc941c2cbcff3af">
current/align2/AbstractMapper.java
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<a href="#8023a4926ea3329eac15850095fd011835c0606d">
current/align2/BBMap.java
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<a href="#f50d097c627a469ad0ecf95d57afabb3405b2b27">
current/align2/BBMap5.java
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current/align2/BBMapAcc.java
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<a href="#64e557b9d4b26716abcebbd933081d2b3039b6b5">
current/align2/BBMapPacBio.java
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<a href="#244ad82cdd9b818adc2a3fb9103c3c7beb7db2c9">
current/align2/BBMapPacBioSkimmer.java
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<a href="#62b97e902920c150ab4ef1adf802e2702176e6f7">
current/align2/BBSplitter.java
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<a href="#7d3a65b56a85951ec983489580e35d4702f58ad6">
current/align2/GradeSamFile.java
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<a href="#7859942605e9da2515c6aa9bcc57a97bf2052a27">
current/align2/MakeQualityHistogram.java
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<a href="#a7b631d8f456e525c5472ef7e78fc664d1d0f267">
current/align2/MakeRocCurve.java
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<a href="#837464c66ce56be5e75f13536ae463a06333ac05">
current/align2/PrintTime.java
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<a href="#174bf373ba63cc448f958360fe7a83a4a4e92011">
current/align2/QualityTools.java
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<a href="#14f30e18717d2fc09a1eba6235981a2fe1a4e216">
current/aligner/AllToAll.java
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current/aligner/MicroAligner.java
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<a href="#07cce4c2b9809b6dd49ed496ae2e775ff3de48a5">
current/aligner/MicroAligner2.java
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<a href="#5fd72068eaaea445ac9325b37b106f2e704f74b7">
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+
current/aligner/SideChannel.java
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<a href="#71f0cbc97c5a6dcff4abac99b9d6e67422d8ada8">
current/assemble/KmerCompressor.java
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<a href="#f6f415de25e5b38af707a823e4fc39c6e3d77a95">
current/assemble/Postfilter.java
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<a href="#c83b8870014d3f3c36343d260d6769bfe0926238">
current/assemble/TadPipe.java
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<a href="#7325505e925acb2556d8e0d25d4b41776875fc57">
current/assemble/Tadpole.java
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<li class="file-stats">
<a href="#0649373d712b82431ce0035c12a50b946f76c5a3">
current/barcode/AnalyzeBarcodes.java
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<a href="#d94036d98153bc9d93350aad2e029cb3d1263cc1">
current/barcode/Barcode.java
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<a href="#799b716c5d6999d931a20cfac44d34c29dfeb31d">
current/barcode/CompareLabels.java
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<a href="#124b75f2d25621f8ed8588f3a09b91374e6b3b61">
current/barcode/CorrelateBarcodes.java
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<a href="#ce9b7a3937e82b3b6c5dabac35d0811b3e6ee517">
current/barcode/CountBarcodes.java
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The diff was not included because it is too large.
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