<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/htslib">Debian Med / htslib</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/55d2a996b2aabfdd03d0b154715e023a8e1f3212">55d2a996</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T22:36:15+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.21+ds</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/4a159b4d86c1940b0fa428242ae10040c180097b">4a159b4d</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T22:36:17+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.21+ds'
Update to upstream version '1.21+ds'
with Debian dir 12949e7c5325f02880a3c97c186d8f95a4f60038</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/577ba0d8e80a8d814b468a09d2f1039eafda235d">577ba0d8</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T22:45:39+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>cram_to_bam_export.patch: upstream exposed cram_to_bam.
Note that cram_to_bam is an internal symbol that should not be used
in normal situations.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/8933a4542664392c725e2d1ea72f7a7cbadfaed4">8933a454</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T22:47:29+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches/*: unfuzz patches.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/95ec4412b4f3dfee3af7975ac4f1d5801303a5db">95ec4412</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T22:53:51+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/libhts3t64.symbols: record newly introduced symbols.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/8cb82333ec95f33be8bc288054fd7a36b7831f43">8cb82333</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T22:55:03+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>fix_sequence_of_linked_libs.patch: normalise Last-Update.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/dae6914187d0ca31917dfb41f56f1f06d719051d">dae69141</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T22:58:38+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/libhts3t64.lintian-overrides: delete.
package-name-doesnt-match-sonames was now an unused override.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/fc84ff4956e8f0e74078d1b67362b85ca0a9f5a8">fc84ff49</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T23:00:44+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/htslib-test.lintian-overrides: flag false positive documentation.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/f98bfe296585e112e8e6bb0eb32bd10714a180f1">f98bfe29</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T23:04:33+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/libhts-dev.lintian-overrides: new.
Hide the unstripped-static-library affecting libhts.a. A comment in
d/rules suggests symbols are needed by reverse dependency sambamba.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htslib/-/commit/c9023836e74797a70a7159f5a2272ae03454c413">c9023836</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-11-12T23:08:35+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/changelog: ready for experimental upload.
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#2b1212ed0c6e95c256812dc2fe823fd4e3feffe8">
annot-tsv.1
</a>
</li>
<li class="file-stats">
<a href="#5a6b5371fd288655be1474f80b4381e9704ef311">
annot-tsv.c
</a>
</li>
<li class="file-stats">
<a href="#6a0642ef327a4ce0d9e388d0b0cf0a71638ad61b">
bgzip.1
</a>
</li>
<li class="file-stats">
<a href="#5422e2382dc57b288f3056d5cd31f46ca4fd2069">
bgzip.c
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#840976018c922d6811354c31daaa780aa6f261bf">
cram/cram_decode.c
</a>
</li>
<li class="file-stats">
<a href="#ad1f88fbd4f5ab20406707c0730e6a84a8380af9">
cram/cram_decode.h
</a>
</li>
<li class="file-stats">
<a href="#8966c85872f8c44558af7fb66d11572221b10d6f">
cram/cram_encode.c
</a>
</li>
<li class="file-stats">
<a href="#ce757aebbb1a9c04c097f4250c7869907b11860b">
cram/cram_external.c
</a>
</li>
<li class="file-stats">
<a href="#d5c6148ddb19f2cff561dd2a5c095a842e197383">
cram/cram_index.c
</a>
</li>
<li class="file-stats">
<a href="#5f323d0f8e1572d29ce69422114ea3c683c08bd6">
cram/cram_io.c
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#9dc5408ee6e19d2c1f6475ed46a0bf87988c2cc1">
debian/htslib-test.lintian-overrides
</a>
</li>
<li class="file-stats">
<a href="#67a66251646c5772c55ede3ab52eb21cc80f5879">
<span class="new-file">
+
debian/libhts-dev.lintian-overrides
</span>
</a>
</li>
<li class="file-stats">
<a href="#29f095751ed0c464ad0d74dfc310230845085ddd">
<span class="deleted-file">
−
debian/libhts3t64.lintian-overrides
</span>
</a>
</li>
<li class="file-stats">
<a href="#e1e94bd25b4763eb39cdc80a640ab96063cef6f6">
debian/libhts3t64.symbols
</a>
</li>
<li class="file-stats">
<a href="#08203429b53d7fa2f4760940c31cbde4eb76e64b">
<span class="deleted-file">
−
debian/patches/cram_to_bam_export.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#06fb03301309b154c051857bbc90bb8d4d2f730b">
debian/patches/fix_float_precision
</a>
</li>
<li class="file-stats">
<a href="#e47cb1a5863bf3a417e62dfa9a72f801cd6d3afe">
debian/patches/fix_sequence_of_linked_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#44dc4f3e32ab8a228183c9e6e05e434df3239a45">
debian/patches/trim-file-prefix.patch
</a>
</li>
<li class="file-stats">
<a href="#51f41eca8f6413c77444e12fb0d221cbe1313344">
faidx.c
</a>
</li>
<li class="file-stats">
<a href="#2f413c8951445b4caee66f9d021b58d94652596b">
header.c
</a>
</li>
<li class="file-stats">
<a href="#08a33c33100064839a45df0cd5a71a643b71aa54">
hfile.c
</a>
</li>
<li class="file-stats">
<a href="#ef0a779afbd8ee7df5d36e5d500f940e2dd01b62">
hfile_libcurl.c
</a>
</li>
<li class="file-stats">
<a href="#64102d126c47fde7586c1360f74ace30174ec5d0">
hfile_s3_write.c
</a>
</li>
<li class="file-stats">
<a href="#1be55503d7d6c773586dc644e84b86a5536816d8">
hts.c
</a>
</li>
<li class="file-stats">
<a href="#ccc671a4b2fc86b1d2ce679f5ac3cf0a32388b5b">
hts_expr.c
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/htslib/-/compare/dc4a93bef378ecd7c80f5721c74d1401e218647b...c9023836e74797a70a7159f5a2272ae03454c413">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
</p>
</div>
</body>
</html>