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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/samtools">Debian Med / samtools</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/samtools/-/commit/4d88bb51aca0935da90cf1c052624837db76f4a3">4d88bb51</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-11-14T12:34:54+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.21</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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</li>
<li class="file-stats">
<a href="#8e91c39ea457744ee86e8378b154b7f3bb28e325">
NEWS.md
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<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
README
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<li class="file-stats">
<a href="#a8c86a0fd0345dc5d362ba470fff0ab9a0fc7f1b">
amplicon_stats.c
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</li>
<li class="file-stats">
<a href="#47e9e5b41a99db7f29a9c389319288b5be3dd44d">
bam2depth.c
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</li>
<li class="file-stats">
<a href="#49977dcd2454890ef52ad55cab2161e1108da37c">
bam_ampliconclip.c
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</li>
<li class="file-stats">
<a href="#5d92784e8cc871e26c7833421c96fb4c112cf954">
bam_ampliconclip.h
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<li class="file-stats">
<a href="#b87c2f698442cf217a3e1f210a9a32243d57e645">
bam_cat.c
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<li class="file-stats">
<a href="#a570bc81d25a3e7cca80a8fb33741c4cd427a6e0">
bam_consensus.c
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<li class="file-stats">
<a href="#1b031362756348a3fc06a80a67e2440c22c1f4ad">
bam_fastq.c
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<li class="file-stats">
<a href="#7e7625df357c73e60fb5763cc5124783c1c76fc6">
bam_import.c
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<li class="file-stats">
<a href="#9c88dc776e2c0fafefd9efcafebfc5ff56b0e55c">
bam_index.c
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<li class="file-stats">
<a href="#d4bc32e2570b26508c2d81d71d23edbaaec16180">
bam_mate.c
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<li class="file-stats">
<a href="#4fc4365483305125a81f12902c48a4deca801439">
bam_md.c
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<li class="file-stats">
<a href="#4554809383bbbc3e2470c76b4bfd91881ede7125">
bam_sort.c
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<li class="file-stats">
<a href="#b80f6d653474c3fd4413bdefffae9a6c73c046af">
bam_split.c
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<li class="file-stats">
<a href="#2a0b24e8c0b1cb8ff4ccae3f35d4a3a8a8eb9cfd">
bam_tview.c
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<li class="file-stats">
<a href="#19ca6d42013c2103588ff1e42bee19d5df9de59e">
bam_tview_curses.c
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<li class="file-stats">
<a href="#b8e8eff661fca489d5a3579e27089b866e1288de">
bam_tview_html.c
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<li class="file-stats">
<a href="#bfc81e0a1121ab31c44ab8a041c8b63aa4167e0f">
bamtk.c
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<li class="file-stats">
<a href="#4d8f0ca62bc8e28a9dad1c22aed2061b2af7c219">
bedidx.c
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<li class="file-stats">
<a href="#ae4043bcca5a1bddf81eaec9e023257d15a2015d">
coverage.c
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<li class="file-stats">
<a href="#131ea2eda9731473dd1cf610feea1c836c24ccb2">
doc/samtools-addreplacerg.1
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<li class="file-stats">
<a href="#890899d7ef7d59def631cb6b62d724f647d1ea35">
doc/samtools-ampliconclip.1
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<li class="file-stats">
<a href="#e841393fcf15d28d19530298ba64d7d1868506d2">
doc/samtools-ampliconstats.1
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</li>
<li class="file-stats">
<a href="#4b8c2f7ba6fa197665c9cf755ac0e7c47ef7db6b">
doc/samtools-bedcov.1
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</li>
<li class="file-stats">
<a href="#4c3d326fc8bbbf65887e3e6426ea12174df3531c">
doc/samtools-calmd.1
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</li>
<li class="file-stats">
<a href="#33e2c5090c4952098ad28f0641247e1e9769750d">
doc/samtools-cat.1
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</li>
<li class="file-stats">
<a href="#d9f205daf2940bd82b3b37a703ddf89bbb14dd51">
doc/samtools-collate.1
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<li class="file-stats">
<a href="#3ab3be1ab74b4148fadb62c3fd12d639ee398b07">
doc/samtools-consensus.1
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
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