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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/cnvkit">Debian Med / cnvkit</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/fe807eadaf563425325879e17a2acd9783b29e11">fe807ead</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2024-11-15T10:53:36+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.9.11</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#b22a01f97e34df61088cca2f4510644d75712a1c">
.github/workflows/tests-tox.yaml
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<a href="#8b28ba38a2c1b980c9846458130ebd674aea62fa">
.readthedocs.yaml
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docker/Dockerfile
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Dockerfile
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<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<a href="#7366318a16393570d3a71b36265d78b541f6060b">
cnvlib/__init__.py
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<a href="#42d036b285f793fa4706218270f28c4e0af74569">
cnvlib/_version.py
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<a href="#15480036fba0b7dad855fda6856199d0684fa1c9">
cnvlib/batch.py
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<a href="#5650a2db29370ab5ab223eb5e22f2cda64ad6185">
cnvlib/call.py
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<a href="#9c039cbe0d6f382867ffe4356a402c3d571fcb89">
cnvlib/cmdutil.py
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<a href="#3c97ce14774c9dcaaf77c07a55b41a9bb29613dd">
cnvlib/cnary.py
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<a href="#37071ebf7e39e57e21ff893de63e92a9b7f6fcba">
cnvlib/commands.py
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<a href="#2d80ee87fcbf5798dce3684c444d415a6d37bf35">
cnvlib/core.py
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<a href="#b1c2e997cbcbc150dfbb18cabfe5fbefc6fe41ce">
cnvlib/coverage.py
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<a href="#e0b9b6c135ef19da5b4d4718f3f11edff2251b58">
cnvlib/export.py
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<a href="#6a9840d2eac663f8ebd4f5d048ee6f9ee950255b">
cnvlib/fix.py
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<a href="#d5de4c64ce69f26a9edcef51de9217f0782e4cd5">
cnvlib/import_rna.py
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<a href="#aa9a0862a0c03ef558a1a7784359c7fac40a3205">
cnvlib/params.py
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<a href="#e302820aded8fa24cbe10b7982e8c81159ed4875">
cnvlib/reference.py
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<a href="#7b2b1c44e1461bc889009b1993bafbdf3768bc70">
cnvlib/reports.py
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<a href="#53cf62a516f30d088c59651d6a2d958620dd5fbc">
cnvlib/rna.py
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<a href="#e87bfcd2ec9408dec42eb764cb87778a4f42cf90">
cnvlib/segfilters.py
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<a href="#2b33ccf937d24b40fb7480b3013a15978923df38">
cnvlib/segmentation/__init__.py
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<a href="#9b34e9846c222fbc2867cbaffe1fffd109acc62b">
cnvlib/segmentation/hmm.py
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<a href="#2dca27b497dd001c9f70173febefc2ff0c9734b7">
cnvlib/vary.py
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<a href="#3b0839c8996cb4de39415c2e95d3672ea1774b2b">
<span class="new-file">
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conda-env.yml
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<a href="#1ba707406fd9404b91ce38fd4982f3ff6fe8a82f">
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data/access-10kb.hg38.bed
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data/refFlat_hg38.txt
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<a href="#4455ea4c28397fb0744fe9965b258e3be7c5bf78">
devtools/conda-recipe/meta.yaml
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<a href="#43584da8adc1ed1c062f4bef38a12637ada1d6d1">
doc/sex.rst
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<a href="#5d07e7d72637aa0d59c89d381fe6dc4cf46e2491">
pyproject.toml
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The diff was not included because it is too large.
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