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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch debian/experimental at <a href="https://salsa.debian.org/med-team/seqan2">Debian Med / seqan2</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/8348f4f3f06b75db659e39ab0ebe2f07d67b288f">8348f4f3</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-11-23T00:18:08+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/b2c20078a7555fa067628fe1df07e4f3060ce779">b2c20078</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-11-23T00:18:12+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.5.0~rc3+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/56ac8452d937f227a9448c9442fb23bd84bcdba2">56ac8452</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-11-23T00:18:45+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.5.0_rc3+dfsg'
Update to upstream version '2.5.0~rc3+dfsg'
with Debian dir 7d2931bafbfcad212db3e6840742f592b3fb0d01</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/5f1b8ec30cb51024072a091c76584ad13ff9ca95">5f1b8ec3</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2024-11-23T00:18:45+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.0 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/824fc87dd486ddbad8e90c9ff0b3babc9f93b757">824fc87d</a></strong>
<div>
<span> by Enrico Seiler </span> <i> at 2024-11-23T00:20:45+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: remove unneeded deps
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/ef283a9dac7ff11c81de5855e7807eb7dd6f48ee">ef283a9d</a></strong>
<div>
<span> by Enrico Seiler </span> <i> at 2024-11-23T00:20:53+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: strip path from seqan-apps, special options for salsa
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/388b49a0862113e2d6c9434ba9cc17bf879bba86">388b49a0</a></strong>
<div>
<span> by Enrico Seiler </span> <i> at 2024-11-23T00:21:01+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/salsa-ci.yml: Skip arm64 crossbuild and reprotest, add env var for use by d/rules
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/0834633fc78cdcb3af00acffb0feab96d783e456">0834633f</a></strong>
<div>
<span> by Enrico Seiler </span> <i> at 2024-11-23T00:21:12+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: refresh patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/d16e75cbf9d078a79bbd800f13fc9ccfc0f97da8">d16e75cb</a></strong>
<div>
<span> by Enrico Seiler </span> <i> at 2024-11-23T00:21:16+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: remove forwarded patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/de362962f5b92a6a55d05eeb3ea526906098408a">de362962</a></strong>
<div>
<span> by Enrico Seiler </span> <i> at 2024-11-23T00:21:23+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: add patches from upstream
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/955b1cbee7a0ef9a3623de3f7ea379f9c1caf3e2">955b1cbe</a></strong>
<div>
<span> by Enrico Seiler </span> <i> at 2024-11-23T00:21:29+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to experimental
</pre>
</li>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
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<li class="file-stats">
<a href="#c41af814c27970efcf185fc6ccb0e76f9145e9b5">
apps/fiona/CMakeLists.txt
</a>
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<li class="file-stats">
<a href="#9df45ff049ab561dfb6f73a35b1abd454a563fc3">
apps/mason2/CMakeLists.txt
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<li class="file-stats">
<a href="#5aa097615785fdba40253684bba99da84c64e965">
apps/ngs_roi/png_canvas.h
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</li>
<li class="file-stats">
<a href="#8325df89a4e32fa0056cb2dd2b540f38c7e9f661">
apps/razers3/CMakeLists.txt
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<li class="file-stats">
<a href="#3dcb9ad163e2d883bff6e83d113afc409831770e">
apps/samcat/CMakeLists.txt
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<li class="file-stats">
<a href="#6978b15e35fe7ba78286c3671a4d489139b4035e">
apps/searchjoin/CMakeLists.txt
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<li class="file-stats">
<a href="#63357cc5eb55bf0516a086cfc0abfbcbd96fd727">
apps/yara/CMakeLists.txt
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#c58b14271598a18cad5d92926be570c06b26795c">
<span class="new-file">
+
debian/patches/0001-FIX-Typo.patch
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<li class="file-stats">
<a href="#f9fb2d431c0106ce0d4f68624f8bd868b9f5b433">
<span class="new-file">
+
debian/patches/0002-FIX-version-check-test-failing-if-program-is-missing.patch
</span>
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<li class="file-stats">
<a href="#d8d7a57f5e3ea2ad55d1f5ce59854d7b7087c4a7">
<span class="new-file">
+
debian/patches/0003-INFRA-Strip-build-paths-from-apps.patch
</span>
</a>
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<li class="file-stats">
<a href="#1bd5bd5427da709384c30e3d691d76d72253eca3">
<span class="deleted-file">
−
debian/patches/fix-version_check-test
</span>
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<li class="file-stats">
<a href="#0a4e986b60a9240ca7d53abf5e2ed246987e8ffc">
<span class="deleted-file">
−
debian/patches/python3
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#fb7a17b973d3ae379fcd1dfac3bc2401ae3cb68d">
debian/patches/skip-some-apps-on-some-archs
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<li class="file-stats">
<a href="#9bb8b600c627d88eaddc9f4141deb1ff48ce6a92">
debian/patches/tweak_readmes
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
debian/salsa-ci.yml
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<li class="file-stats">
<a href="#29ee36e29f31a3c8eb7ca15c1d19e58b3b16708a">
include/seqan/modifier/modifier_reverse.h
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<li class="file-stats">
<a href="#5421d8e59947800a49243871fa00015d358a6b9b">
include/seqan/sequence/string_packed.h
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<a href="#db2f334b73cd625bdf1634b558fe26fa6cc69fe5">
manual/environment.yml
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<a href="#fb3ecb70d8710b3b60c0eb6f5036fa31a5608e60">
manual/requirements.txt
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<li class="file-stats">
<a href="#1c94ff0ebf0bbdc8fb7c189b0e0f40bbdbe931c9">
manual/source/Infrastructure/Use/FindSeqAnCMake.rst
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<li class="file-stats">
<a href="#1529829d351700696e508dd37f736ced6121101f">
manual/source/conf.py
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<li class="file-stats">
<a href="#00e402f219317bb2c69fd08c544c5614c8f68d41">
tests/index/CMakeLists.txt
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<li class="file-stats">
<a href="#fc2edb16d3d7ed2b50875f7279ea03154cb7bbcf">
tests/journaled_string_tree/CMakeLists.txt
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<li class="file-stats">
<a href="#5eea7c041d48ae7e11b22343d81218212de0149c">
tests/parallel/CMakeLists.txt
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<p style="font-size: small; color: #737278;">
—
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