<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/htseq">Debian Med / htseq</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/4186c8f298398bc5f24402eeae5461d6663e0e37">4186c8f2</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:42:35+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fix Python3.12 string syntax
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/0c9f41688aa2f0b32813b0f2c24afa0062de914d">0c9f4168</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:49:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Exclude files via Files-Excluded instead of gbp.conf filter
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/f7459e18bef1f5453478febf2b0ba2d188a8ac58">f7459e18</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:51:33+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/e28bd04f25d3f99dacc068103a58d0299415d1fd">e28bd04f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:51:34+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.0.9+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/aaa93b7ab5d36fd2f21be59ace3ccad191ade34d">aaa93b7a</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:51:44+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.0.9+dfsg'

Update to upstream version '2.0.9+dfsg'
with Debian dir 9b75d4a47d7b427bccdf5e7098dad6d57a99e74c</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/d804b5c869631c131cccaf94b840d22bba577440">d804b5c8</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:51:44+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.0 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/797cc939f8886656a236fd7a77ef0159b6b83635">797cc939</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:53:27+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>MOve "New upstream version" on top of changelog
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/276ee4093ef15158202fc30591c65e473605a141">276ee409</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:55:05+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Fix clean target
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/htseq/-/commit/0528caa73faf31ee39250b918d0d46fb86fed6c7">0528caa7</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-07T17:59:23+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#df6ecc836f3157835bcbc4e82548b42f13ff9aec">
.ci_deploy.sh
</a>
</li>
<li class="file-stats">
<a href="#899ce9c202bf7bb5480e72836c3edc773c9c4244">
.github/workflows/ci.yml
</a>
</li>
<li class="file-stats">
<a href="#f130ad0d1d16d0d70ec30d355f736ae3784b05cf">
.github/workflows/deploy.yml
</a>
</li>
<li class="file-stats">
<a href="#a279d1a4448d9e5ddf06e1615e591a8995d6e894">
<span class="deleted-file">

HTSeq/_version.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#deee97d3856d8429d3ad63b6241bddd8e0621230">
HTSeq/features.py
</a>
</li>
<li class="file-stats">
<a href="#77cec82669f613ab4a4a88de2df0309d096c11b2">
HTSeq/scripts/count.py
</a>
</li>
<li class="file-stats">
<a href="#8e394c919df525d79e1d379fcab24bc93e12175d">
HTSeq/scripts/count_with_barcodes.py
</a>
</li>
<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
<span class="deleted-file">

PKG-INFO
</span>
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
debian/clean
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#67df3adc98b97f87d2c73e4a05f22a987c3a5a7b">
debian/gbp.conf
</a>
</li>
<li class="file-stats">
<a href="#af6304ecbc9db54d9736ecc134ff2dbda48645a7">
<span class="new-file">
+
debian/patches/python3.12-syntax.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#a0a7dd5d06a3a510ed3df5d1aba9a585aa857fec">
deploywheels.sh
</a>
</li>
<li class="file-stats">
<a href="#081e68971850dce73a2f672586b84208dd772aea">
doc/features.rst
</a>
</li>
<li class="file-stats">
<a href="#f86456c11071a3e3c905f4ffce635aa11f60ddd4">
doc/history.rst
</a>
</li>
<li class="file-stats">
<a href="#15f2afb1753348206fb7cc2281805ef1fd6e5e45">
doc/htseqcount.rst
</a>
</li>
<li class="file-stats">
<a href="#bc2cbff58f41446757564b4e48b09b0daedfaa3c">
<span class="new-file">
+
doc/images/highc_fig1.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#194449d5039b2292e9a3c3e2b863f491ab2109fc">
<span class="new-file">
+
doc/images/highc_fig2.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#3cb9a83b45e139e5d8cc2cb4016f0153f94a6697">
<span class="new-file">
+
doc/images/highc_fig3.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#82f446ded9e9e44d0830b31846ace5b7d5d00dd6">
<span class="new-file">
+
doc/images/highc_fig4.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#7eb83a54b216d9f0e32bff57471754891fff6dbc">
<span class="new-file">
+
doc/tutorials/bam_reader.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#f735cb2429d30bafec6ce91fbbbdf854b83d52e8">
<span class="new-file">
+
doc/tutorials/fastx_reader.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#c3b46762f041c79b98d77d80f5c2af2ef47308f3">
<span class="new-file">
+
doc/tutorials/highc.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#22fc0092780ad6f05a10002efa2914be119fc704">
<span class="new-file">
+
doc/tutorials/step_vs_stretch_vector.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#5bd322bd7faf15bc79d8a3f8d10abc855ac1988a">
<span class="new-file">
+
doc/tutorials/tutorial_exon_level.rst
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/htseq/-/compare/6586378e1119b6e239d839e539b72ac899f33be9...0528caa73faf31ee39250b918d0d46fb86fed6c7">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>