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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/sra-sdk">Debian Med / sra-sdk</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/af5df5e4d867369447a9aa6cd3bb88d6f5208cea">af5df5e4</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T11:59:48+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/1d1abc24592a7fbb63d4e1269eaaa23e9a50dd30">1d1abc24</a></strong>
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<span> by Andreas Tille </span> <i> at 2024-12-12T11:59:50+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.1.1+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/155690ad1c95e6f960af24dea455c03daf79c426">155690ad</a></strong>
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<span> by Andreas Tille </span> <i> at 2024-12-12T12:00:21+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/3.1.1+dfsg'
Update to upstream version '3.1.1+dfsg'
with Debian dir 003bcf05abd78ec0a6ae9a07e1f3c6b7faa4e136</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/6258bb16e9c22d43ec7c3ba46d7effbb7fd9238b">6258bb16</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T12:23:27+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Adapt patches, Note: It seems we need to mark several new patches inside tools/external/sra-search/test/CMakeLists.txt "online" !
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#8aff1fb8da0999d8ee716133633d0de7f173339b">
build/Makefile.env
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<a href="#c9512c0b1798e84b5d6a945ad880784dab140a53">
build/Makefile.vers
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<a href="#1781271ab3cce0bace72226785eefc9b2143f133">
build/docker/Makefile
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<a href="#f5aa8741e30275380fa236444586ca03b6a58fb4">
build/env.cmake
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<a href="#b05df9accc61b1ae4c0206e18db90cebde6d1f07">
build/install.sh
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#5a9509211261ecd442d4df323322858c5787f098">
debian/patches/label_online_tests.patch
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<a href="#e64e01d87b710eeb5e37171de483f0380e477695">
debian/patches/link_vdb_dynamically.patch
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<a href="#cd57e98edf79fd105c4e28a8a42d59842aec6009">
debian/patches/prefer_dynamic_libraries.patch
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<a href="#0a4e986b60a9240ca7d53abf5e2ed246987e8ffc">
debian/patches/python3
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<a href="#cb611ebf4c25e7a930a0867bcdad7e8312533660">
debian/patches/set_explicit_path_to_schemata.patch
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<a href="#38733db880971229323ac4fba089cf3236cf31a8">
debian/patches/support_libre2-11.patch
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<a href="#9a81c2d03a78acc88844346a5b9605c29cb5a6e2">
debian/patches/use_c_locale_for_comma.patch
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<a href="#6b8784f7523448f02a6fdc5cb843f646fdd76fc0">
debian/patches/use_soversions.patch
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<a href="#744a3234c61ba08069c981534ad79c7847ccfee8">
libs/ascp/CMakeLists.txt
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<a href="#9e14c21b3fae051ef2f2db20d02e983cb9692c42">
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libs/ascp/bsd/ascp-path.c
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<a href="#adc389bf797ae0f85a45fc53e3d0f748622af1d3">
ngs/CHANGES.md
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<a href="#b5c66c62c07c9f95821dfc1ebc49cb930127a553">
ngs/ngs-bam/Makefile.vers
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<a href="#53cca74a60e7f90122c3297cd023f28e7d3c1eb5">
ngs/ngs-java/Makefile.vers
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<a href="#a1a03b2c7069d1697ded4d6bfa25a712a22a7780">
ngs/ngs-java/examples/CMakeLists.txt
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<a href="#d3e841b0ff9236d60f175d87534b7b076cd734ce">
ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java
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<a href="#4e31582c889982cac583982ef120d9b9289ca8fb">
ngs/ngs-python/Makefile.vers
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<a href="#4f738d7beeeeed6e421d88cef118120b97efb8e1">
ngs/ngs-python/examples/CMakeLists.txt
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<a href="#3a027526d2d86e93dc3a7d29f6da5b88fbe6c421">
ngs/ngs-python/ngs/LibManager.py
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<a href="#2afffc4ce43763096a150509c292219b53ea0d81">
ngs/ngs-sdk/Makefile.vers
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<a href="#1a26f87f2bdbe8c29e06a8de6fd379f228f8a6f5">
ngs/ngs-sdk/dispatch/version.h
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<li class="file-stats">
<a href="#55f527529e69f26f9e50144900a99ead21749527">
scripts/fix-sra-names.sh
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<li class="file-stats">
<a href="#e27d6b9ca1fb3698ece83e46a4c9b1a7db6f81e4">
scripts/prepare-sra-names.sh
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
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<p style="font-size: small; color: #737278;">
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