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<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/ncbi-vdb">Debian Med / ncbi-vdb</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/059bd2e9a0eaee4b4e4384b880ed4ea1d1c61f1b">059bd2e9</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T09:55:38+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/aa936e09507921c92789ed060dedfeeacea69dee">aa936e09</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T09:55:39+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.1.1+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/dc8df141eb48f07fe448a70389dc4217994fdd71">dc8df141</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T09:55:48+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/3.1.1+dfsg'

Update to upstream version '3.1.1+dfsg'
with Debian dir 0e5b9ceb58204d66b2cd050ced4957c10c2fe962</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/c264be8f26fe5e283d6361c26b53afacfbe4ced1">c264be8f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T09:55:49+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.0 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/30b642bcd7254390b2aac5a6dc855149294470ee">30b642bc</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T09:57:48+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/3b3d2200a19a201dc3deae5bae452fc0327a39a3">3b3d2200</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T10:56:31+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/copyright: update according to lrc
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/1055c9c8d9f039e45015fc2a29773d7c2ea87ce6">1055c9c8</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2024-12-12T11:57:53+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upload to experimental
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<a href="#c9512c0b1798e84b5d6a945ad880784dab140a53">
build/Makefile.vers
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<li class="file-stats">
<a href="#f5aa8741e30275380fa236444586ca03b6a58fb4">
build/env.cmake
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<a href="#1ed2995aa50893032cd3101eb692217bdfd61f3e">
build/install-root.sh
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#3a7d4e1d061020ea09bea938c6db867c6e573fad">
debian/patches/detect_BITS.patch
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<a href="#45e9f11cace1e67ae64d0cb9089b82ddd78797f2">
debian/patches/fix_cmake.patch
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<a href="#c60cf9d66d84badae472308d9c1fd5df957b3ebb">
debian/patches/fix_x32.patch
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<a href="#67b406a2a3af9f4ab82a9d19be4a0da406e07f9b">
interfaces/kdb/consistency-check.h
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<a href="#f588a6cd314f532b39ace9f94650746d87e2ce27">
interfaces/kdb/manager.h
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<li class="file-stats">
<a href="#2f90ff439bfe173e21e8af3f61191a4d1d6e1143">
interfaces/klib/vdb_release_version.h
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<a href="#4e1faaa7d22d5c760fd232f945fb95dacdc90873">
interfaces/kns/http.h
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<a href="#8a322c4c23eaa87287bd3d3147b4e00f5be21da9">
interfaces/kns/socket.h
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interfaces/os/bsd/byteswap.h
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interfaces/os/bsd/endian.h
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interfaces/os/bsd/os-native.h
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<a href="#dfed5ba466bba4054bd0eb8243f8ece296ef4ed2">
interfaces/vdb/vdb-priv.h
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<a href="#bb9aa7c436d1d86df5fce16f9e75302332cffceb">
interfaces/vfs/services-priv.h
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<a href="#2f7454632997703adde95b6c4cb11d707e1b1360">
libs/CMakeLists.txt
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<a href="#37ef82096fc1543b8bd7630c97a90f6caa627f1e">
libs/align/al_iterator.c
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<a href="#5269e61828b904ec6c197d28193c4a45eec32a8c">
libs/align/align-access.c
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<a href="#f712c982184aabf622c19395607eeb8594f61f4d">
libs/align/bam.c
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libs/align/pl_iterator.c
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libs/align/reader-refseq.c
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<a href="#76e34de1376c880ce06807177660cd0fbd29240f">
libs/align/reader-wgs.c
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libs/align/reader-wgs.h
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<a href="#7c77076c178038d1128f0272fa0f21fb096fd5fd">
libs/align/ref_iterator.c
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<a href="#70ba58b3e26cee2e63ca561baee40567f7d46b85">
libs/align/reference-cmn.c
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>

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