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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/canu">Debian Med / canu</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/canu/-/commit/486984deae0cad590059e9627b5f248a4d79e282">486984de</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2025-01-03T16:12:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.3+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/canu/-/commit/9e3259d2f9e465054cd8028ce04f925eb2c470fc">9e3259d2</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2025-01-03T16:12:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/canu/-/commit/ee3b61592ab534a3e88e21edbe4003ed67427a99">ee3b6159</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2025-01-03T16:12:58+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.3+dfsg'
Update to upstream version '2.3+dfsg'
with Debian dir 316a71aa20c062b960e2c6ad7b30f582789abb6d</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/canu/-/commit/dd24a40e568ea048e851ff6efc7bd5fe12df6088">dd24a40e</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2025-01-03T16:12:58+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.0 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/canu/-/commit/5b87adb006dfd9cfb13dcd27a59b1594fad3b00a">5b87adb0</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2025-01-03T16:48:29+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>[skip ci] Adapt **ONLY SOME** patches - need to stop here for time constraints!!!
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#e51fc3707619b600b059305f265f05549360199c">
debian/patches/external-mhap.patch
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<li class="file-stats">
<a href="#7da444438a54a9ebd3c91819ede998b8a3c0a13c">
debian/patches/libsnappy
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<li class="file-stats">
<a href="#255156f8de07824f6a420e7a4e3e209d376746a2">
debian/patches/stacktrace
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<li class="file-stats">
<a href="#d6ea03cc85d2073a5b2915c04980df8eaff55951">
debian/patches/use-debian-mhap-at-runtime.patch
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<li class="file-stats">
<a href="#40654db28ffcb379ae4e091b8a9a19737bce4af1">
<span class="deleted-file">
−
scripts/version_update.pl
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<li class="file-stats">
<a href="#09a8e11089bd7b184c2ba7778565c1350e1c7e3a">
src/Makefile
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<li class="file-stats">
<a href="#cf9f55721d0c8d8c04f62816eeb441c7fb8382c4">
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+
src/Makefile.boilermake
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<li class="file-stats">
<a href="#d237019528ae52af59653098e483934f54983cd2">
src/bogart/AS_BAT_AssemblyGraph.C
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<li class="file-stats">
<a href="#85524360bddef233eb128a9ccd9121fec317ad3b">
src/bogart/AS_BAT_AssemblyGraph.H
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<li class="file-stats">
<a href="#a54fef1f144954393f7213af443540839f62d26f">
src/bogart/AS_BAT_BestOverlapGraph.C
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<li class="file-stats">
<a href="#ea5e534f631b45e7e7797aee707dcc10293b52fb">
src/bogart/AS_BAT_BestOverlapGraph.H
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<li class="file-stats">
<a href="#b23ecb760f6660af10e32c8bcfcf04a1515eb3a6">
src/bogart/AS_BAT_ChunkGraph.C
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<li class="file-stats">
<a href="#d6ccc300ae2df62ce3e92f6f74a53fb7e6eb832c">
src/bogart/AS_BAT_ChunkGraph.H
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<li class="file-stats">
<a href="#222a8ad94c6260795cf208a50356198aca4e6779">
src/bogart/AS_BAT_FindCircular.C
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<li class="file-stats">
<a href="#fda758919d901010599466f057e10fa53c901b13">
src/bogart/AS_BAT_Instrumentation.C
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<li class="file-stats">
<a href="#aeb1afc74da8d88b39cd5056a4d142a100d8d208">
src/bogart/AS_BAT_Logging.C
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<li class="file-stats">
<a href="#59119bc6618800107abb0429359dfd470f0335d2">
src/bogart/AS_BAT_Logging.H
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<li class="file-stats">
<a href="#666fb6bea07a09d2c992eed6c59c01f22bd11fbd">
src/bogart/AS_BAT_MarkRepeatReads.C
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<li class="file-stats">
<a href="#0fa925bec9836119b1b886b5b460cad7b819a443">
src/bogart/AS_BAT_MergeOrphans.C
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<li class="file-stats">
<a href="#23aa16ea79db5eb5ec60621bcfee5e3b169e4ab2">
src/bogart/AS_BAT_MergeOrphans.H
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<li class="file-stats">
<a href="#0acc7699c39da65041f5aa86bb4505bdccb840ab">
src/bogart/AS_BAT_OptimizePositions.C
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<li class="file-stats">
<a href="#80d80b4dca5a701d2ccaf42d170bdc564315dfe7">
src/bogart/AS_BAT_OverlapCache.C
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<li class="file-stats">
<a href="#a145d5ecbea7005c1cd0413f5677de7ee4ef2c1e">
src/bogart/AS_BAT_OverlapCache.H
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<li class="file-stats">
<a href="#bdb859bee1536bade4d2c27e546c1ed397b0d93d">
src/bogart/AS_BAT_PlaceContains.C
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<li class="file-stats">
<a href="#cecea6f0d7420aaa8ce3fbcce1a274d1894f26fb">
src/bogart/AS_BAT_PlaceReadUsingOverlaps.C
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</li>
<li class="file-stats">
<a href="#2b9da398b8453f77e4032233a58c0f9a1ad5cbb2">
src/bogart/AS_BAT_ReadInfo.C
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<li class="file-stats">
<a href="#0f40a1fc1981130553470e0f51898f62dfa4f94d">
src/bogart/AS_BAT_ReadInfo.H
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</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
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<p style="font-size: small; color: #737278;">
—
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<a href="https://salsa.debian.org/med-team/canu/-/compare/4faacd76715e85f6de739cc2410eac7cebc79579...5b87adb006dfd9cfb13dcd27a59b1594fad3b00a">View it on GitLab</a>.
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