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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/canu">Debian Med / canu</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/canu/-/commit/486984deae0cad590059e9627b5f248a4d79e282">486984de</a></strong>
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<span> by Andreas Tille </span> <i> at 2025-01-03T16:12:54+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.3+dfsg</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#40654db28ffcb379ae4e091b8a9a19737bce4af1">
<span class="deleted-file">
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scripts/version_update.pl
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<li class="file-stats">
<a href="#09a8e11089bd7b184c2ba7778565c1350e1c7e3a">
src/Makefile
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<li class="file-stats">
<a href="#cf9f55721d0c8d8c04f62816eeb441c7fb8382c4">
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src/Makefile.boilermake
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<li class="file-stats">
<a href="#d237019528ae52af59653098e483934f54983cd2">
src/bogart/AS_BAT_AssemblyGraph.C
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<li class="file-stats">
<a href="#85524360bddef233eb128a9ccd9121fec317ad3b">
src/bogart/AS_BAT_AssemblyGraph.H
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<li class="file-stats">
<a href="#a54fef1f144954393f7213af443540839f62d26f">
src/bogart/AS_BAT_BestOverlapGraph.C
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<li class="file-stats">
<a href="#ea5e534f631b45e7e7797aee707dcc10293b52fb">
src/bogart/AS_BAT_BestOverlapGraph.H
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<li class="file-stats">
<a href="#b23ecb760f6660af10e32c8bcfcf04a1515eb3a6">
src/bogart/AS_BAT_ChunkGraph.C
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<li class="file-stats">
<a href="#d6ccc300ae2df62ce3e92f6f74a53fb7e6eb832c">
src/bogart/AS_BAT_ChunkGraph.H
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<li class="file-stats">
<a href="#222a8ad94c6260795cf208a50356198aca4e6779">
src/bogart/AS_BAT_FindCircular.C
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<li class="file-stats">
<a href="#fda758919d901010599466f057e10fa53c901b13">
src/bogart/AS_BAT_Instrumentation.C
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<li class="file-stats">
<a href="#aeb1afc74da8d88b39cd5056a4d142a100d8d208">
src/bogart/AS_BAT_Logging.C
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<li class="file-stats">
<a href="#59119bc6618800107abb0429359dfd470f0335d2">
src/bogart/AS_BAT_Logging.H
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<li class="file-stats">
<a href="#666fb6bea07a09d2c992eed6c59c01f22bd11fbd">
src/bogart/AS_BAT_MarkRepeatReads.C
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<li class="file-stats">
<a href="#0fa925bec9836119b1b886b5b460cad7b819a443">
src/bogart/AS_BAT_MergeOrphans.C
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<li class="file-stats">
<a href="#23aa16ea79db5eb5ec60621bcfee5e3b169e4ab2">
src/bogart/AS_BAT_MergeOrphans.H
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<li class="file-stats">
<a href="#0acc7699c39da65041f5aa86bb4505bdccb840ab">
src/bogart/AS_BAT_OptimizePositions.C
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<li class="file-stats">
<a href="#80d80b4dca5a701d2ccaf42d170bdc564315dfe7">
src/bogart/AS_BAT_OverlapCache.C
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<li class="file-stats">
<a href="#a145d5ecbea7005c1cd0413f5677de7ee4ef2c1e">
src/bogart/AS_BAT_OverlapCache.H
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<li class="file-stats">
<a href="#bdb859bee1536bade4d2c27e546c1ed397b0d93d">
src/bogart/AS_BAT_PlaceContains.C
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<li class="file-stats">
<a href="#cecea6f0d7420aaa8ce3fbcce1a274d1894f26fb">
src/bogart/AS_BAT_PlaceReadUsingOverlaps.C
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<li class="file-stats">
<a href="#2b9da398b8453f77e4032233a58c0f9a1ad5cbb2">
src/bogart/AS_BAT_ReadInfo.C
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<li class="file-stats">
<a href="#0f40a1fc1981130553470e0f51898f62dfa4f94d">
src/bogart/AS_BAT_ReadInfo.H
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<li class="file-stats">
<a href="#9e6293ca9f82b7be9261b72d0fe1da4e24713ceb">
src/bogart/AS_BAT_SplitTig.H
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<li class="file-stats">
<a href="#a4f36f4baebb54ee902f630fd4fbb87bf39856bc">
src/bogart/AS_BAT_TigVector.C
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<li class="file-stats">
<a href="#5dc032e5fcfa3a436a65d289404add02197620cf">
src/bogart/AS_BAT_TigVector.H
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<li class="file-stats">
<a href="#a2d84be5b5b74ce1f6a75a20b124cac3e15aeeb5">
src/bogart/AS_BAT_Unitig.C
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<li class="file-stats">
<a href="#bd441caac58d9b73f15ae842113848828869ce32">
src/bogart/AS_BAT_Unitig.H
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<li class="file-stats">
<a href="#eaa770b0ced113982d842ca5f00012f9b06313eb">
src/bogart/bogart.C
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
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