<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Charles Plessy pushed to branch master at <a href="https://salsa.debian.org/med-team/last-align">Debian Med / last-align</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/7b3a8d6179fbe4034293d724c352b8b7dc5dbb1d">7b3a8d61</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-01-16T13:50:32+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1608</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/2a2770c15776688947ac8275912b810772262996">2a2770c1</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-01-16T13:50:32+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/e5f9036d21325497f421327ff04e508e5ece3da0">e5f9036d</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-01-16T13:50:34+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1608'
Update to upstream version '1608'
with Debian dir 96d7b7ed8387c352b4eccf6a334aeafbb6765d6e</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/54a4deab3976c144aa0daa6c2787179af4fb52ee">54a4deab</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-01-16T13:50:34+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.0 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/ed55a3f800bad6ccdf61a72170a3cd76157427ad">ed55a3f8</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-01-16T13:50:36+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Add missing trailing newline in debian/patches/series.
Changes-By: lintian-brush
Fixes: lintian: quilt-series-without-trailing-newline
See-also: https://lintian.debian.org/tags/quilt-series-without-trailing-newline.html
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/last-align/-/commit/11eeb40d1c410f97c9dc549c668464f0fb24e15e">11eeb40d</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-01-16T14:02:03+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #28272d; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#a77bb6ef5a37d684b7c6c7cb610a2c95fb4db11e">
bin/fasta-nr
</a>
</li>
<li class="file-stats">
<a href="#217c6bc12768d15897bf0441140820b8ec85a125">
bin/last-dotplot
</a>
</li>
<li class="file-stats">
<a href="#b28d0bae11d2d85d4b9e586e90e31255f8b6189c">
bin/last-map-probs
</a>
</li>
<li class="file-stats">
<a href="#d0e6a13b5307be3c75caf62eed059976281a2a43">
bin/last-postmask
</a>
</li>
<li class="file-stats">
<a href="#2eec104bd40706dceb555b7fffb342760f3cbc59">
bin/last-train
</a>
</li>
<li class="file-stats">
<a href="#b81b5de5f7bfd818c69285e09a1e8f1bef73444e">
bin/maf-convert
</a>
</li>
<li class="file-stats">
<a href="#970fc983e9aedfff96d9edf69624a5023e7fcba4">
bin/maf-cut
</a>
</li>
<li class="file-stats">
<a href="#e834f7ba6661c528f3ca6a667caa7e7ed5138828">
bin/maf-join
</a>
</li>
<li class="file-stats">
<a href="#283f34e3d51a7cafac592c840989299e218a1a99">
<span class="new-file">
+
bin/maf-linked
</span>
</a>
</li>
<li class="file-stats">
<a href="#63a0bbefe2fd66bf4c0908eacca1076fc04263b6">
bin/maf-swap
</a>
</li>
<li class="file-stats">
<a href="#b204714f55c985bc1bd73c579376a32b0cde5bbd">
data/BISF.seed
</a>
</li>
<li class="file-stats">
<a href="#fe2d21a7c4e686c385a317f2f1113e7f60b32c70">
data/BISR.seed
</a>
</li>
<li class="file-stats">
<a href="#3df69c219892be746ac3aa99e75b45ccc241df8b">
<span class="new-file">
+
data/HUMSUM.mat
</span>
</a>
</li>
<li class="file-stats">
<a href="#297e3e6d76f75a1b543b4c8b21ca1d6d01cb82dd">
data/RY128-12.seed
</a>
</li>
<li class="file-stats">
<a href="#61a5757bf79c05e7a75d5c91b60a5dcabaaaa1c9">
data/RY16-11.seed
</a>
</li>
<li class="file-stats">
<a href="#c08354c0b0830a059880a852680dec5f7003bfb8">
data/RY16-8.seed
</a>
</li>
<li class="file-stats">
<a href="#f2751d8625d2277c99120885eaad1a35aceef91d">
data/RY32-10.seed
</a>
</li>
<li class="file-stats">
<a href="#4e60ec78b552ac162a6f1fa999df7111c8a99cba">
data/RY32-12.seed
</a>
</li>
<li class="file-stats">
<a href="#d4865a426f82cbe8dc69174553ff32a71d5fc7b8">
data/RY4-6.seed
</a>
</li>
<li class="file-stats">
<a href="#ac21ffc02f8c9b4c4b386aa5429318f960392150">
data/RY4-9.seed
</a>
</li>
<li class="file-stats">
<a href="#131858441b2e21493a51b4090390c70b8f456d72">
data/RY64-13.seed
</a>
</li>
<li class="file-stats">
<a href="#24878cae8421203a8827aadb2fa3cf5ef2cef525">
data/RY8-10.seed
</a>
</li>
<li class="file-stats">
<a href="#ff2c3344642495a5d57dfe6c736ac9785228e4f9">
data/RY8-8.seed
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#ee69c2f6d5f6bb8ebe3d4acf88de9a8b3f45984d">
doc/bisulfite.rst
</a>
</li>
<li class="file-stats">
<a href="#6da0343fd1e96c9faaa35ff4e058c0bb04191144">
doc/last-cookbook.rst
</a>
</li>
<li class="file-stats">
<a href="#3005ac7967e4a8278470a34d68f44dcd2b1b63cd">
doc/last-dotplot.rst
</a>
</li>
<li class="file-stats">
<a href="#7d8e0289360832d7ecdeea5163631840a96266ca">
doc/last-evalues.rst
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">
—
<br>
<a href="https://salsa.debian.org/med-team/last-align/-/compare/49008ce142bbb90290d81cb2c4aa6aa7f0f5b118...11eeb40d1c410f97c9dc549c668464f0fb24e15e">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
</p>
</div>
</body>
</html>